View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_5 (Length: 714)
Name: NF16929_high_5
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 13 - 698
Target Start/End: Original strand, 35820231 - 35820916
Alignment:
| Q |
13 |
tgaacttgaattattcattgatcctagagaagttcaaagaagggaaaatcttttcgaagtaatgtcaaaaaattgtttacaaaacaagaagaccaacaac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35820231 |
tgaacttgaattattcattgatcctagagaagttcaaagaagggaaaatcttttcgaagtaatgtcgaaaaattgtttacaaaacaagaagaccaacaac |
35820330 |
T |
|
| Q |
113 |
aataaagggtttattgattttgtgaaagtggaaggaataatgtgtagcattggtttgagaactttatcagattatgttgaagaaatatcaaagttagaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35820331 |
aataaagggtttattgattttgtgaaagtggaagaaataatgtgtagcattggtttgagaactttatcagattatgttgaagaaatatcaaagttagaag |
35820430 |
T |
|
| Q |
213 |
ttgaagctcagaatcaagcaggaacaggtggactaattgttgtctcaaacataaacaatctcatgtcacttgtttcatataccaaatcaatggtatttag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35820431 |
ttgaagctcagaatcaagcaggaacaggtggactaattgttgtctcaaacataaacaatctcatgtcacttgtttcatataccaaatcaatggtatttag |
35820530 |
T |
|
| Q |
313 |
aaatgatggagaatcagaagagtgtaagccaatatctatgtttttatacaacaaaagtaaaatacatgataatgatagttcttcttcatcttctttttct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35820531 |
aaatgatggagaatcagaagagtgtaagccaatatctatgtttttatacaacaaaagtaaaatacatgataatgatagttcttcttcatcttctttttct |
35820630 |
T |
|
| Q |
413 |
caatccatgatgacagttaatattcctgacgaatttcgttgcccgatttcgctagacctaatgagagatcctgtgattgtttcatcaggacacacttatg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35820631 |
caatccatgatgacagttaatattcctgacgaatttcgttgtccgatttcgctagacctaatgagagatcctgtgattgtttcatcaggacacacttatg |
35820730 |
T |
|
| Q |
513 |
atagaatttcaattgcagaatggattaactctggtcaccacacttgtcctaaaagtggacaaagactaattcacactgctctaataccaaactatgcatt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35820731 |
atagaatttcaattgcagaatggattaactctggtcaccacacttgtcctaaaagtggacaaagactaattcacactgctctaataccaaactatgcgtt |
35820830 |
T |
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| Q |
613 |
gaagagccttgttcatcaatggtgctatgaaaacaatgtcaaaatgaatgaggcaatcacaaaaaacaacaatagtagcagcaaaa |
698 |
Q |
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| T |
35820831 |
gaagagccttgttcatcaatggtgctatgaaaacaatgtcaaaatgaatgaggcaatcacaaaaaacaacaatagtagcagcaaaa |
35820916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 457 - 683
Target Start/End: Complemental strand, 1047604 - 1047379
Alignment:
| Q |
457 |
gatttcgctagacctaatgagagatcctgtgattgtttcatcaggacacacttatgatagaatttcaattgcagaatggattaactctggtcaccacact |
556 |
Q |
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||||||||||||| ||||||| |||||||||||| | |||||||| |||||||||||||||||||||||| |||| || || |||||||||| |||||| |
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| T |
1047604 |
gatttcgctagac-taatgagggatcctgtgattctatcatcagggcacacttatgatagaatttcaattccagagtgtatagactctggtcaacacact |
1047506 |
T |
|
| Q |
557 |
tgtcctaaaagtggacaaagactaattcacactgctctaataccaaactatgcattgaagagccttgttcatcaatggtgctatgaaaacaatgtcaaaa |
656 |
Q |
| |
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|||| | |||||| |||||||||||| |||| |||| |||||||||| |||| ||| |||||||||||||| |||||||| || ||||| |||||| | |
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| T |
1047505 |
tgtcttgaaagtgaacaaagactaatccacaatgctttaataccaaattatgtattaaagagccttgttcaccaatggtgataggaaaataatgtctcag |
1047406 |
T |
|
| Q |
657 |
tgaatgaggcaatcacaaaaaacaaca |
683 |
Q |
| |
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|||||||||||| ||| |||||||||| |
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| T |
1047405 |
tgaatgaggcaaccactaaaaacaaca |
1047379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 588
Target Start/End: Original strand, 1023091 - 1023190
Alignment:
| Q |
486 |
tgattgtttcatcaggacacacttatgatagaatttcaattgcagaatggattaactctggtcaccacacttgtcctaaaagtggacaaagactaattca |
585 |
Q |
| |
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||||||| |||||||| ||||||||| ||||||||||||||||| || || |||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
1023091 |
tgattgtatcatcagggcacacttat---agaatttcaattgcagagtgtatagactctggtgaccacacttgtcctgaaagtaaacaaagactaattca |
1023187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 481 - 536
Target Start/End: Original strand, 1020779 - 1020834
Alignment:
| Q |
481 |
tcctgtgattgtttcatcaggacacacttatgatagaatttcaattgcagaatgga |
536 |
Q |
| |
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|||| ||||||| | |||| |||||||||||||||||||||||| |||||| |||| |
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| T |
1020779 |
tcctatgattgtataatcaagacacacttatgatagaatttcaactgcagagtgga |
1020834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 551 - 652
Target Start/End: Complemental strand, 40642784 - 40642683
Alignment:
| Q |
551 |
cacacttgtcctaaaagtggacaaagactaattcacactgctctaataccaaactatgcattgaagagccttgttcatcaatggtgctatgaaaacaatg |
650 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |||| | |||| ||| ||| ||| |||||||||||||| ||||||||||| ||||| |||| |
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| T |
40642784 |
cacacttgtcctgaaagtgaacaaagactaattcacaatgctttcatactaaattatatattaaagagccttgttcaccaatggtgctaggaaaataatg |
40642685 |
T |
|
| Q |
651 |
tc |
652 |
Q |
| |
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|| |
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|
| T |
40642684 |
tc |
40642683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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