View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_high_57 (Length: 202)
Name: NF16929_high_57
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 43403588 - 43403499
Alignment:
| Q |
97 |
attatatattgatcataattctctgcaatatcaaagatcacgacgatgcaagactcaattggtattcctacatgcttttcaccagcagat |
186 |
Q |
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| T |
43403588 |
attatatattgattgtaattctctgcaatatcaaagatcacgacgatgcaagactcaattggtattcctacatgcttttcaccagcagat |
43403499 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 43403676 - 43403618
Alignment:
| Q |
19 |
tatctttacctaatttttaaaaaattaggctgttttcgcaacctgagtcgctccatcaa |
77 |
Q |
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| T |
43403676 |
tatctttacctaatttttaaaaaattaggctgttttcgcaacctgagtcgctccatcaa |
43403618 |
T |
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