View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_low_1 (Length: 757)

Name: NF16929_low_1
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_low_1
NF16929_low_1
[»] chr8 (11 HSPs)
chr8 (199-336)||(1193476-1193611)
chr8 (101-258)||(1241225-1241378)
chr8 (91-258)||(1251928-1252091)
chr8 (242-354)||(1241380-1241494)
chr8 (242-354)||(1252093-1252207)
chr8 (36-131)||(1195262-1195356)
chr8 (627-682)||(1220164-1220219)
chr8 (635-733)||(1252509-1252607)
chr8 (635-727)||(1241796-1241888)
chr8 (251-340)||(1195508-1195596)
chr8 (228-313)||(1276196-1276281)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 199 - 336
Target Start/End: Original strand, 1193476 - 1193611
Alignment:
Q  199 ttacttcattccagatacatcagcttcaataaatggtcgtcccattttctccattgatttggttttcaaacgcagctgtttctccttatacagaacttca 298  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||| |||     
T  1193476 ttacttcattccagacacaacagcttcaataaatggtcgtcccattttctccattgatttagttttcaaacgcaactgcttctcgttatacagaatttcg 1193575  T
Q  299 gccaaccttcatataaaatataatcgtcacataattag 336  Q
    |||||||||  ||||||||| ||| |||||||||||||    
T  1193576 gccaacctt--tataaaataaaattgtcacataattag 1193611  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 1241225 - 1241378
Alignment:
Q  101 atccattgttttatttatttcacaccatgcatgcatatatagagaacttgtaac--atatagtacaagcctgcttaattatatatgcatgaccttgacat 198  Q
    |||||||||||||||||||||||| |||||||      |||||||||||| |||  ||||||||||||| ||||| |||||||||  |     ||| |||    
T  1241225 atccattgttttatttatttcacatcatgcat------atagagaacttgcaacgtatatagtacaagcatgcttcattatatatagacacatttggcat 1241318  T
Q  199 ttacttcattccagatacatcagcttcaataaatggtcgtcccattttctccattgattt 258  Q
    ||| ||||||||||| ||| | ||||||| |||||||||||||||||||||||| |||||    
T  1241319 ttatttcattccagagacaactgcttcaacaaatggtcgtcccattttctccatggattt 1241378  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 1251928 - 1252091
Alignment:
Q  91 aaagacacatatccattgttttatttatttcacaccatgcatgcatatatagagaacttgtaac--atatagtacaagcctgcttaattatatatgcatg 188  Q
    |||| |||| || ||||||||||||||||||||| |||||||      |||||||||||| |||  ||||||||||||| ||||| |||||||||  |      
T  1251928 aaagccacagatacattgttttatttatttcacatcatgcat------atagagaacttgcaacgtatatagtacaagcatgcttcattatatatagaca 1252021  T
Q  189 accttgacatttacttcattccagatacatcagcttcaataaatggtcgtcccattttctccattgattt 258  Q
       ||| |||||| ||||||||||| ||| | ||||||| |||||||||||||||||||||||| |||||    
T  1252022 catttggcatttatttcattccagagacaactgcttcaacaaatggtcgtcccattttctccatggattt 1252091  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 354
Target Start/End: Original strand, 1241380 - 1241494
Alignment:
Q  242 attttctccattgatttggttttcaaacgcagctgtttctccttatacagaacttcagccaaccttcatataaaatataatcgtcacataattagcat-- 339  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||| || |||  ||||||||||||||  |||||||||||| |||||||| ||| |||      
T  1241380 attttctccattgatttcgttttcaaacgcaactgcttctccttgtagagagtttcagccaaccttc--ataaaatataattgtcacatagttaacattt 1241477  T
Q  340 --tattaattaaatgat 354  Q
      |||||||||||||||    
T  1241478 cctattaattaaatgat 1241494  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 354
Target Start/End: Original strand, 1252093 - 1252207
Alignment:
Q  242 attttctccattgatttggttttcaaacgcagctgtttctccttatacagaacttcagccaaccttcatataaaatataatcgtcacataattagcat-- 339  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||| || |||  ||||||||||||||  |||||||||||| |||||||| ||| |||      
T  1252093 attttctccattgatttcgttttcaaacgcaactgcttctccttgtagagagtttcagccaaccttc--ataaaatataattgtcacatagttaacattt 1252190  T
Q  340 --tattaattaaatgat 354  Q
      |||||||||||||||    
T  1252191 cctattaattaaatgat 1252207  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 131
Target Start/End: Original strand, 1195262 - 1195356
Alignment:
Q  36 acaagaccgaatacattttaaaggaaaagcaacaaactagaaatattcactcattaaagacacatatccattgttttatttatttcacaccatgca 131  Q
    |||||||| ||||||||| ||| | ||| ||||||| |||||| | ||| |||| |||||||||||||||||| ||||||||||||| ||||||||    
T  1195262 acaagaccaaatacatttgaaaaggaaaacaacaaagtagaaacactca-tcatgaaagacacatatccattgatttatttatttcaaaccatgca 1195356  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 627 - 682
Target Start/End: Original strand, 1220164 - 1220219
Alignment:
Q  627 ttaaagtacacaaacctttcaagagcttcagcgtttgtaccctcacttggtttttc 682  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  1220164 ttaaagtgcacaaacctttcaagagcctcagcatttgtaccctcacttggtttttc 1220219  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 635 - 733
Target Start/End: Original strand, 1252509 - 1252607
Alignment:
Q  635 cacaaacctttcaagagcttcagcgtttgtaccctcacttggtttttcttgtggtttaaaactagttacatccatgaccttaactgtttcttctagtaa 733  Q
    |||| ||||||||||||| | ||| |||||||||||| |||||||||| | |||   ||||  ||| ||||||||||||||||| |||||||| |||||    
T  1252509 cacagacctttcaagagcctgagcatttgtaccctcagttggtttttcgtatgggacaaaagaagtaacatccatgaccttaacagtttcttccagtaa 1252607  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 727
Target Start/End: Original strand, 1241796 - 1241888
Alignment:
Q  635 cacaaacctttcaagagcttcagcgtttgtaccctcacttggtttttcttgtggtttaaaactagttacatccatgaccttaactgtttcttc 727  Q
    |||| ||||||||||||| | ||| |||||||||||| |||||||||| | |||   ||||  ||| ||||||||||||||||| ||||||||    
T  1241796 cacagacctttcaagagcctgagcatttgtaccctcagttggtttttcgtatgggacaaaagaagtaacatccatgaccttaacagtttcttc 1241888  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 1195508 - 1195596
Alignment:
Q  251 attgatttggttttcaaacgcagctgtttctccttatacagaacttcagccaaccttcatataaaatataatcgtcacataattagcatt 340  Q
    |||||||||||||||||||||||||| | ||| || || ||||  |||||||||||||||| |||  | ||| |||||||||||| ||||    
T  1195508 attgatttggttttcaaacgcagctgctgctctttgtatagaatctcagccaaccttcata-aaataaaaattgtcacataattaacatt 1195596  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 1276196 - 1276281
Alignment:
Q  228 taaatggtcgtcccattttctccattgatttggttttcaaacgcagctgtttctccttatacagaacttcagccaaccttcatata 313  Q
    |||||||  ||||| |||| ||||| |||||  |||||||||||||||  |||||||| || ||||  ||||||||||||||||||    
T  1276196 taaatggctgtccccttttttccatcgatttcattttcaaacgcagctccttctccttgtatagaatatcagccaaccttcatata 1276281  T

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