View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_low_13 (Length: 445)

Name: NF16929_low_13
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_low_13
NF16929_low_13
[»] chr6 (3 HSPs)
chr6 (13-425)||(6935822-6936234)
chr6 (19-426)||(6921959-6922374)
chr6 (79-425)||(6948490-6948844)
[»] chr7 (5 HSPs)
chr7 (79-422)||(1986571-1986921)
chr7 (147-253)||(13417722-13417828)
chr7 (369-423)||(15572522-15572576)
chr7 (157-228)||(19721222-19721293)
chr7 (394-422)||(18515463-18515491)
[»] scaffold0024 (2 HSPs)
scaffold0024 (147-386)||(161085-161333)
scaffold0024 (12-87)||(160977-161052)
[»] chr2 (4 HSPs)
chr2 (172-235)||(5437654-5437717)
chr2 (154-235)||(18921514-18921595)
chr2 (172-216)||(553767-553811)
chr2 (179-215)||(20578959-20578995)
[»] chr1 (2 HSPs)
chr1 (177-215)||(42414172-42414210)
chr1 (175-209)||(43907690-43907724)


Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 6936234 - 6935822
Alignment:
Q  13 aatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaactcaacaacaggactgttctcatgaatatcaatcgtctgataatcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6936234 aatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaactcaacaacaggactgttctcatgaatatcaatcgtctgataatcc 6936135  T
Q  113 tccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccga 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6936134 tccctgacgaacttatcgacaaagtcgtaacgccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccga 6936035  T
Q  213 tccagacttcgtcaaaaggcaccataagaagcaatctacacacctcgcttttctcacaaacaattataaagatttgcgagaatgtaaggtcgtgcccatc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6936034 tccagacttcgtcaaaaggcaccataagaagcaatctacacacctcgcttttctcacaaacaattataaagatttgcgagaatgtaaggtcgtgcccatc 6935935  T
Q  313 tctagtttgatggagggtacttcgaattctatcacccttgccgtcccttccaaccaattctattacaaggacgctggtaggattgttggttcatgcaatg 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6935934 tctagtttgatggagggtacttcgaattctatcacccttgccgtcccttccaaccaattctattacaaggacgctggtaggattgttggttcatgcaatg 6935835  T
Q  413 gattggtctgcat 425  Q
    |||||||||||||    
T  6935834 gattggtctgcat 6935822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 6922374 - 6921959
Alignment:
Q  19 cttctagggtttcttccacaaaaaattccaaagggttttcacttccaact-caacaacaggactgttctcatgaatatcaatcgtctgataatcctccct 117  Q
    |||||||||||||||||||||||| ||| || |||||||||| | ||||| |||||||   ||||||||||||||||||  || |||| ||||||||| |    
T  6922374 cttctagggtttcttccacaaaaagttcgaa-gggttttcacgtacaacttcaacaacct-actgttctcatgaatatccctcctctggtaatcctccat 6922277  T
Q  118 gacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccag 217  Q
    ||||| ||||||| | ||||| |||    ||| ||| ||||| |||| |||  |||||||||||||| |||||| ||||||||||||||||  ||||| |    
T  6922276 gacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaagtgtgtttccaagtcttggaaaaccctaatcttggatcccg 6922177  T
Q  218 acttcgtcaaaaggcaccataagaagcaatctaca---------cacctcgcttttctcacaaacaattataaagatttgcgagaatgtaaggtcgtgcc 308  Q
    |||| | ||||| ||||| ||||||||||||||||         ||||||||  | ||| ||||||  | | ||| || | ||||||||| ||  |||||    
T  6922176 actttgccaaaatgcaccttaagaagcaatctacacgaacaagtcacctcgcaatcctctcaaacatgtctgaaggttcgggagaatgtagggcagtgcc 6922077  T
Q  309 catctctagtttgatggagggtacttcgaattctatcacccttgccgtcccttccaaccaattctattacaaggacgctggtaggattgttggttcatgc 408  Q
    ||||||| ||||| ||||| |||  ||  ||||||| |||||| |||  || | | ||||||||| ||||||||| ||||||||| ||||||||||||||    
T  6922076 catctctcgtttgctggagagtaactcacattctataacccttaccgatccataccaccaattcttttacaaggatgctggtagggttgttggttcatgc 6921977  T
Q  409 aatggattggtctgcatg 426  Q
    ||||||||||||||||||    
T  6921976 aatggattggtctgcatg 6921959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 79 - 425
Target Start/End: Complemental strand, 6948844 - 6948490
Alignment:
Q  79 actgttctcatgaatatcaatcgtctgataatcctccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagt 178  Q
    ||||||||||||||||||  || |||| |||| |||| |||||| |||||||   ||||| ||||   |||  |||||||| |||| ||| |||||||||    
T  6948844 actgttctcatgaatatccctcctctggtaattctccatgacgaccttatcgttgaagtcctaacgttcctc-acgtaaaatctctaatgttgatgaagt 6948746  T
Q  179 gtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaatctaca---------cacctcgcttttctcac 269  Q
    |||||||||||||||||||||||||||| ||||||||  |||||| ||||| ||||| ||||||||||||||||         |||||||| |||||| |    
T  6948745 gtgtttgcaagtcatggaaaaccctaatatccgatccctacttcgccaaaatgcaccttaagaagcaatctacaccaatgagtcacctcgcatttctctc 6948646  T
Q  270 aaacaattataaagatttgcgagaatgtaaggtcgtgcccatctctagtttgatggagggtacttcgaattctatcacccttgccgtcccttccaaccaa 369  Q
    |||||  | ||||| || |  |||||||| |   || ||||||||| | ||| ||||| |||  ||  ||||| |||||||| |||  |||| | |||||    
T  6948645 aaacatgtctaaaggttcggcagaatgtaggacagtccccatctctcgcttgctggagagtaactcacattctctcacccttaccgatccttaccaccaa 6948546  T
Q  370 ttctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgcat 425  Q
    |||  ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6948545 ttcccttacaaggacgctggtagggttgttggttcatgcaatggattggtctgcat 6948490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 79 - 422
Target Start/End: Complemental strand, 1986921 - 1986571
Alignment:
Q  79 actgttctcatgaatatcaatcgtctgataatcctccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagt 178  Q
    ||||||||||||||||||  || |||| |||| |||| |||||||||||||| | ||||| ||||   ||| ||||||||| |||| ||| |||||||||    
T  1986921 actgttctcatgaatatccctcctctggtaattctccatgacgaacttatcgtcgaagtcctaacgttcctcgacgtaaaatctctaatgttgatgaagt 1986822  T
Q  179 gtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaatctaca---------cacctcgcttttctcac 269  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||| ||||| ||||| ||| ||||||||||||         |||| ||| |||||| |    
T  1986821 gtgtttgcaagtcatggaaaaccctaatatcccatccctacttcgccaaaatgcaccttaa-aagcaatctacaccaatgagtcaccccgcatttctctc 1986723  T
Q  270 aaacaattataaagatttgcgagaatgtaaggtcgtgcccatctctagtttgatggagggtacttcgaattctatcacccttgccgtcccttccaaccaa 369  Q
    |||||  | ||||| || | |||||||| |||   |||| |||||| | ||  ||| | |||  ||  |||||||||||||| |||  |||| | |||||    
T  1986722 aaacatatctaaaggttcgggagaatgt-agggaatgcctatctctcgcttactggtgagtaactcacattctatcacccttaccgatccttaccaccaa 1986624  T
Q  370 ttctattacaaggacgctggtaggattgttggttcatgcaatggattggtctg 422  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1986623 ttcttttacaaggacgctggtagggttgttggttcatgcaatggattggtctg 1986571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 13417828 - 13417722
Alignment:
Q  147 ccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaa 246  Q
    |||||| |||||| |||||||   |||||||||||| |||||||| |||||||||||| |||| ||||||  ||||||||||| ||||| ||||| ||||    
T  13417828 ccttgatgtaaaatctctgataaggatgaagtgtgtatgcaagtcgtggaaaaccctattctctgatccactcttcgtcaaaatgcaccttaagaggcaa 13417729  T
Q  247 tctacac 253  Q
    |||||||    
T  13417728 tctacac 13417722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 15572576 - 15572522
Alignment:
Q  369 attctattacaaggacgctggtaggattgttggttcatgcaatggattggtctgc 423  Q
    |||| ||| |||||||| |||| || |||||||||||||||||||||||||||||    
T  15572576 attcaatttcaaggacggtggtggggttgttggttcatgcaatggattggtctgc 15572522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 19721222 - 19721293
Alignment:
Q  157 aaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaa 228  Q
    |||||||||||||  ||||| ||||| ||||| |||| ||||||||||||||| ||||| | ||||| ||||    
T  19721222 aaaactctgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcccgccttcgccaaa 19721293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 18515491 - 18515463
Alignment:
Q  394 attgttggttcatgcaatggattggtctg 422  Q
    |||||||||||||||||||||||||||||    
T  18515491 attgttggttcatgcaatggattggtctg 18515463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 386
Target Start/End: Original strand, 161085 - 161333
Alignment:
Q  147 ccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaa 246  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||  |||||| |||    
T  161085 ccttgacgtaaaatctcttatgcagatgaagtgtgtttgcaagtcttggaaaaccctaatctccgatccagtcttcgtcaaaatgcactttaagaaacaa 161184  T
Q  247 tct---------acacacctcgcttttctcacaaacaattataaagatttgcgagaatgtaaggtcgtgcccatctctagtttgatggagggtacttcga 337  Q
    |||         |||||||||||||||||| ||||||| | | ||| ||   | || |||| ||  |  ||||||||| ||||||||||| || ||||||    
T  161185 tctacaggaatgacacacctcgcttttctctcaaacaagtttgaaggttctggtgattgtatggctgcacccatctctcgtttgatggagtgttcttcga 161284  T
Q  338 attctatcacccttgccgtcccttccaaccaattctattacaaggacgc 386  Q
     ||||||||||||| | |  |||| | |||||||| |||||||||||||    
T  161285 gttctatcacccttactgatccttaccaccaattcaattacaaggacgc 161333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 160977 - 161052
Alignment:
Q  12 gaatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaa-ctcaacaacaggactgttctc 87  Q
    ||||| |||||||||||||||||||||||| ||| | |||||||||||||| ||| ||||||| | | |||||||||    
T  160977 gaatacccttctagggtttcttccacaaaagatt-cgaagggttttcactttcaacctcaacacccgcactgttctc 161052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 5437717 - 5437654
Alignment:
Q  172 atgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcacc 235  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||   |||||||||| |||||    
T  5437717 atgaagtgtgtttgcaagtcatggaacaccctcatctccgaaccatttttcgtcaaaatgcacc 5437654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 18921595 - 18921514
Alignment:
Q  154 gtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcacc 235  Q
    ||||||||||||||||  ||||| || |||||||| |||| |||||||||||| ||  ||||   ||||||||||| |||||    
T  18921595 gtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaaatgcacc 18921514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 553767 - 553811
Alignment:
Q  172 atgaagtgtgtttgcaagtcatggaaaaccctaatctccgatcca 216  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  553767 atgaagtgtgtttgcaaatcatggaacaccctcatctctgatcca 553811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 20578995 - 20578959
Alignment:
Q  179 gtgtttgcaagtcatggaaaaccctaatctccgatcc 215  Q
    |||||||||| |||||||||||||||||||| |||||    
T  20578995 gtgtttgcaaatcatggaaaaccctaatctctgatcc 20578959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 42414172 - 42414210
Alignment:
Q  177 gtgtgtttgcaagtcatggaaaaccctaatctccgatcc 215  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  42414172 gtgtgtatgcaaatcatggaaaaccctaatctccgatcc 42414210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 43907690 - 43907724
Alignment:
Q  175 aagtgtgtttgcaagtcatggaaaaccctaatctc 209  Q
    |||||||||||||| ||||||||||||||||||||    
T  43907690 aagtgtgtttgcaaatcatggaaaaccctaatctc 43907724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University