View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_16 (Length: 421)
Name: NF16929_low_16
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 177 - 403
Target Start/End: Original strand, 24528574 - 24528802
Alignment:
| Q |
177 |
tatacaatttgtgcagtcagtgttagcatgaaaaaatacaatgcaactagatgaggtggtgagatccttggagaagagttaacaaatgatgggtgatcat |
276 |
Q |
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| T |
24528574 |
tatacaatttgtgcagtcactgttagcatgaaaaaatacaatgcaactagacgaggtggtgagatccttggagaatagtcaacaaatgatgggtgatcat |
24528673 |
T |
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| Q |
277 |
aaatcttcaaaa-gaaaat-aaatactaggaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagattttaacaaaaagattttact |
374 |
Q |
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| T |
24528674 |
aaatcttcaaaaagaaaatcaaatactagtaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagatttcaacaaaaagatttgact |
24528773 |
T |
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| Q |
375 |
actgtcaagtgtcattgctcggaagagtt |
403 |
Q |
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| T |
24528774 |
actgtcaagtgtcattgctcggaagagtt |
24528802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 24521012 - 24521172
Alignment:
| Q |
15 |
gatgaaaatgagcttgtactcgttaaagctggaatatgaaggtaatttgtttgatcatattagtaagtttaatgagttggtatctagacttatgaatgca |
114 |
Q |
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| T |
24521012 |
gatgaaaatgagcttgtactcgttaaagctggaagatgaaggtaatgtgtttgatcatattagtaagtttaatgagttggtatctagacttatgaatgca |
24521111 |
T |
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| Q |
115 |
agggacaatatcaaagatgaagagtaaatgttacttttgttagcttcactaccataatctt |
175 |
Q |
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| T |
24521112 |
agggacaatatcaaaggtgaagagtaaatgttacttttattagcttcactaccataatctt |
24521172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 39370741 - 39370675
Alignment:
| Q |
299 |
actaggaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagattttaacaaaaa |
365 |
Q |
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| T |
39370741 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaa |
39370675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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