View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_18 (Length: 390)
Name: NF16929_low_18
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 377
Target Start/End: Original strand, 10880186 - 10880549
Alignment:
| Q |
14 |
agggagtttgaggattgggagtctcgtagcaatttccttttcctttcccttagatggtgtttttggtttagaaatcgaggtatgatttttgttagcttgg |
113 |
Q |
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| T |
10880186 |
agggagtttgaggattgggagtctcgtagcaatttccttttcctttcccttagatggtgtttttggtttagaaatcgaggtatgatttttgttagcttgg |
10880285 |
T |
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| Q |
114 |
aggaaacatcttttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttgcatggaacttcagtttgagatggacagtggaacatgcag |
213 |
Q |
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| T |
10880286 |
aggaaacatcttttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttgcatggaacttcagtttgagatggacagtggaacatgcag |
10880385 |
T |
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| Q |
214 |
ctctcagctccaccaataatggtctccatatgatgtaattgtagagataagaaatcaatcacaaggaactgaactttcaccgtctttcttgctcctcctt |
313 |
Q |
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| T |
10880386 |
ctctcagctccaccaataatggtctccatatgatgtaattgtagagataagaaatcaatcacaaggaactgaactttcaccgtctttcttgctcctcctt |
10880485 |
T |
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| Q |
314 |
ggccaaaagtgatcagttactccacataacccaagggttttgttgaggatccgttgaatccata |
377 |
Q |
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| T |
10880486 |
ggccaaaagtgatcagttactccacataatccaagggttttgttgaggatccgttgaatccata |
10880549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 374
Target Start/End: Original strand, 10918650 - 10919003
Alignment:
| Q |
22 |
tgaggattgggagtctcgtagcaatttccttttcctttcccttagatggtgtttttggtttagaaatcgaggtatgatttttgttagcttggaggaaaca |
121 |
Q |
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| T |
10918650 |
tgaggactgggagtctcgtagcaatttccttttcctttccctaagatggtgtttttggtttggaaatcgaggtctgattt--gttagcttggaggaaaca |
10918747 |
T |
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| Q |
122 |
tcttttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttgcatggaacttcagtttgagatggacagtggaacatgcagctctcagc |
221 |
Q |
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| T |
10918748 |
tattttggcaacctcaatgtctccgcgcaatatggcgatggtgtcatctttttcatgctacttcattttgagatgggcagttgaacatgcagctctcaga |
10918847 |
T |
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| Q |
222 |
tccaccaataatggtctccatatgatgtaattgt--agagataagaaatcaatcacaaggaactgaactttcaccgtctttcttgctcctccttggccaa |
319 |
Q |
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| T |
10918848 |
tttgacaatgttggtctccctatcatgcaattgtagagagacaagcaatcaatcacaaggaactgaactttcaccgtctttctttctcttccttggccga |
10918947 |
T |
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| Q |
320 |
aagtgatcag-ttactccacataacccaagggttttgttgaggatccgttgaatcc |
374 |
Q |
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| T |
10918948 |
aagtgatcagtttactcaacataaccccagggatttgttgaggagccgttgaatcc |
10919003 |
T |
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