View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_2 (Length: 753)
Name: NF16929_low_2
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 608
Target Start/End: Complemental strand, 16911808 - 16911223
Alignment:
| Q |
11 |
cagagaccaatggactagagtgcgttgttgttgcagtcgtcgaaatagccgcaatggaccaatggactaaagtactcccatattggttgaagatggcata |
110 |
Q |
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| T |
16911808 |
cagagaccaatggactagagtgcgttgctgttgcagtcatcgaaatagtcgca-tgga----tagtc------actcccatattggttgaagatggcata |
16911720 |
T |
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| Q |
111 |
ggggaagtcaccctctccacatttgtaggaattacactactaacatgaatttcttgtgaacattgcacaatagattgtgcattggatgcagaagcgaaac |
210 |
Q |
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| T |
16911719 |
ggggaagtcaccctctccacatttgtaggaattatactactaacatgaatttcttgtgaacattgcacagtagattgcgcattggatgcagaagcggaac |
16911620 |
T |
|
| Q |
211 |
ttgaattaggacgaaccatttcaggaagacgtttaccccctctcaattgcatacgaagataaactcacaagtttttgaaaaccaataacnnnnnnnnntt |
310 |
Q |
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| T |
16911619 |
ttgaattaggacgaaccatttcaggaagacgtttaccacctctcaattgcatacgaagataaactcacaagtttttgaaaaccaataacgaaaaattttt |
16911520 |
T |
|
| Q |
311 |
agagaaaaagttttcaaaaatttgaaacttagcacacaaatgtcccactggacgtgccaattagtgtagtgtgattttgataaacaagcgctggttaata |
410 |
Q |
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| T |
16911519 |
acataaaaagttttcaaaaatttgaaacttagcacacaaatgtcccactggacgtgccaattagtttagtgtgattttggtaaacaagcgctggttaata |
16911420 |
T |
|
| Q |
411 |
aaatagttacttgcgagatcaatgtgtgttaatatttcccacaaatgtttgaatgttcatggtgtacttgagattatttgaataaaagaggaaaacaatc |
510 |
Q |
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| T |
16911419 |
aaatagttacttgcgagatcaacgtgtgttaatatttcccatacatacttgaatgttcatggtgtacttgagattatttgaataaaagaggaaaacaatc |
16911320 |
T |
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| Q |
511 |
ttcaaatccaaagagaattgaagatgtcgaaatatgcaaattacaagtaaatgcaagggaaaacataatttaaattatattgaattaaatgaaaagtt |
608 |
Q |
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| T |
16911319 |
ttcaaatccaaagagaattgaagatgtcgaaatatgcaaa-aacaagtaaatgcaagggaaaacataatttaaattatattgaattaaatgaaaagtt |
16911223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 614 - 740
Target Start/End: Complemental strand, 16910873 - 16910746
Alignment:
| Q |
614 |
atgctttcacccttggccttgaaatgacaaatcaaacttcatttgacta-catttaattgagtctgttgaaaatacagattaacaaccatacctcaacaa |
712 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16910873 |
atgctttcacccttgaccttgaaatgataaatcaaacttcattttacccgcatttaattgagtctgttgaaaatacagactaacaaccatacctcaacaa |
16910774 |
T |
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| Q |
713 |
ttatacatatatccatacaaatatttga |
740 |
Q |
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| T |
16910773 |
ttatacatatattcatacaaatatttga |
16910746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 446 - 543
Target Start/End: Complemental strand, 13723741 - 13723645
Alignment:
| Q |
446 |
ttcccacaaatgtttgaatgttcatggtgtacttgagattatttgaataaaagaggaaaacaatcttcaaatccaaagagaattgaagatgtcgaaat |
543 |
Q |
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|||||| ||||| ||||||||||||||| | ||||| ||||||| ||||||| | |||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
13723741 |
ttcccataaatgcttgaatgttcatggttttcttgaaattatttaaataaaataagaaaacaatcttcaaatccaaa-agaatagaagttgtcgaaat |
13723645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 621 - 686
Target Start/End: Complemental strand, 19119032 - 19118966
Alignment:
| Q |
621 |
cacccttggccttgaaa-tgacaaatcaaacttcatttgactacatttaattgagtctgttgaaaat |
686 |
Q |
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| T |
19119032 |
cacccttggccttaaaaatgataagtcaaacttcatttgattgcatttaattgagaatgttgaaaat |
19118966 |
T |
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Back To:
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