View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_low_20 (Length: 376)

Name: NF16929_low_20
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_low_20
NF16929_low_20
[»] chr3 (13 HSPs)
chr3 (11-376)||(10880457-10880822)
chr3 (162-376)||(10918913-10919128)
chr3 (11-57)||(34984712-34984758)
chr3 (11-54)||(43808881-43808924)
chr3 (11-56)||(9380012-9380057)
chr3 (11-60)||(53814968-53815017)
chr3 (11-57)||(16243166-16243212)
chr3 (11-57)||(54460367-54460413)
chr3 (17-57)||(49743785-49743825)
chr3 (11-57)||(41976321-41976367)
chr3 (11-58)||(538014-538062)
chr3 (11-58)||(20729430-20729478)
chr3 (17-57)||(43926124-43926164)
[»] scaffold0520 (1 HSPs)
scaffold0520 (11-57)||(4834-4880)
[»] chr6 (4 HSPs)
chr6 (11-57)||(28666130-28666176)
chr6 (11-57)||(10289186-10289232)
chr6 (17-57)||(2378435-2378475)
chr6 (17-57)||(15543215-15543255)
[»] chr2 (18 HSPs)
chr2 (11-58)||(43722903-43722950)
chr2 (11-57)||(13972767-13972813)
chr2 (11-58)||(5665829-5665876)
chr2 (11-57)||(3874482-3874528)
chr2 (17-57)||(9189532-9189572)
chr2 (11-55)||(13136764-13136808)
chr2 (19-59)||(31586785-31586825)
chr2 (17-57)||(37280556-37280596)
chr2 (13-57)||(38014636-38014680)
chr2 (17-57)||(43208769-43208809)
chr2 (11-57)||(6825974-6826020)
chr2 (11-57)||(10599951-10599997)
chr2 (11-59)||(25869833-25869882)
chr2 (17-58)||(40780657-40780698)
chr2 (17-57)||(8887842-8887882)
chr2 (17-57)||(9186303-9186343)
chr2 (17-57)||(25957323-25957363)
chr2 (13-57)||(31430594-31430638)
[»] scaffold0757 (1 HSPs)
scaffold0757 (11-61)||(4559-4609)
[»] chr7 (10 HSPs)
chr7 (11-57)||(4596878-4596924)
chr7 (11-57)||(9865596-9865642)
chr7 (16-58)||(9080375-9080417)
chr7 (11-57)||(45288092-45288138)
chr7 (11-57)||(45291428-45291474)
chr7 (17-58)||(11951276-11951317)
chr7 (17-57)||(37167030-37167070)
chr7 (11-58)||(20081594-20081641)
chr7 (11-57)||(4694723-4694769)
chr7 (11-57)||(8276012-8276058)
[»] chr4 (19 HSPs)
chr4 (11-57)||(24045011-24045057)
chr4 (11-57)||(52007385-52007431)
chr4 (11-58)||(12782105-12782152)
chr4 (11-57)||(19819950-19819996)
chr4 (15-57)||(19826701-19826743)
chr4 (11-57)||(53010412-53010458)
chr4 (17-58)||(38284375-38284416)
chr4 (13-58)||(44809860-44809905)
chr4 (13-57)||(29323979-29324023)
chr4 (17-57)||(48636709-48636749)
chr4 (11-57)||(15430719-15430766)
chr4 (11-57)||(15437333-15437380)
chr4 (11-57)||(27013229-27013276)
chr4 (11-57)||(27677919-27677966)
chr4 (11-60)||(15431161-15431211)
chr4 (11-60)||(15437775-15437825)
chr4 (11-49)||(40794200-40794238)
chr4 (17-57)||(34018659-34018699)
chr4 (17-57)||(48416408-48416448)
[»] chr5 (11 HSPs)
chr5 (11-58)||(25329455-25329502)
chr5 (11-57)||(7270241-7270287)
chr5 (11-57)||(28788355-28788401)
chr5 (11-57)||(30065562-30065608)
chr5 (13-57)||(14016992-14017036)
chr5 (13-57)||(17747617-17747661)
chr5 (17-57)||(26753580-26753620)
chr5 (17-57)||(41307405-41307445)
chr5 (11-57)||(21827994-21828041)
chr5 (13-55)||(39191333-39191375)
chr5 (11-52)||(4100391-4100431)
[»] chr1 (10 HSPs)
chr1 (11-57)||(2404722-2404768)
chr1 (17-57)||(23022803-23022843)
chr1 (17-57)||(45940621-45940661)
chr1 (11-58)||(21108347-21108394)
chr1 (11-57)||(41059187-41059234)
chr1 (11-58)||(42021720-42021767)
chr1 (11-57)||(21019322-21019367)
chr1 (17-58)||(28110282-28110323)
chr1 (17-57)||(37184743-37184783)
chr1 (13-57)||(45961663-45961707)
[»] chr8 (2 HSPs)
chr8 (13-58)||(18826790-18826835)
chr8 (17-58)||(16952997-16953038)
[»] scaffold0381 (1 HSPs)
scaffold0381 (11-57)||(6507-6554)
[»] scaffold0270 (3 HSPs)
scaffold0270 (11-58)||(4374-4421)
scaffold0270 (11-58)||(11504-11551)
scaffold0270 (11-57)||(1014-1060)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 10880822 - 10880457
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaaccactttaatagaaatagggcgttacacttgccttctacaacagttagatgc 110  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10880822 aatatcataaaaagactctaaaaatagcaaataactgactgtcatcaaccactttaatagaaatagggcgttacacttgccttctacaacagttagatgc 10880723  T
Q  111 ctaacagagctcctaaaattgcaatccctttgcccgtctaggcgtatatgtctaaatttgatgtccgcgtgattctggtcaacactaggacatcttgtga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10880722 ctaacagagctcctaaaattgcaatccctttgcccgtctaggcgtatatgtctaaatttgatgtccgcgtgattctggtcaacactaggacatcttgtga 10880623  T
Q  211 tatcatgtactctaccatgttcaagactctcctattgacagagaataacatctatccttatggatccgaacactatggattcaacggatcctcaacgaaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10880622 tatcatgtactctaccatgttcaagactctcctattgacagagaataacatctatccttatggatccgaacactatggattcaacggatcctcaacaaaa 10880523  T
Q  311 cccttgggtcatgtggagtaactgatcgcttttggccaaggatgagcaagaaagacggtgaaagtt 376  Q
    ||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  10880522 cccttggattatgtggagtaactgatcacttttggccaaggaggagcaagaaagacggtgaaagtt 10880457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 162 - 376
Target Start/End: Complemental strand, 10919128 - 10918913
Alignment:
Q  162 ctaaatttgatgtccgcgtgattctggtcaacactaggacatcttgtgatatcatgtactctaccatgttcaagactctcctattgacagagaataacat 261  Q
    |||| |||||||||||   ||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  10919128 ctaactttgatgtccgtaggatcctggtcaacactaggacatcttgcgacatcatgtactataccatgttcaagactctcctattgatagagaataacat 10919029  T
Q  262 ctatccttatggatccgaacactatggattcaacggatcctcaacgaaacccttgggtcatgtggagt-aactgatcgcttttggccaaggatgagcaag 360  Q
     | |||||||||||| |||||||| ||||||||||| |||||||| || |||| |||| |||| |||| |||||||| |||| ||||||||| ||| |||    
T  10919028 atctccttatggatctgaacactacggattcaacggctcctcaacaaatccctggggttatgttgagtaaactgatcactttcggccaaggaagagaaag 10918929  T
Q  361 aaagacggtgaaagtt 376  Q
    ||||||||||||||||    
T  10918928 aaagacggtgaaagtt 10918913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 34984712 - 34984758
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  34984712 aatatcataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 43808924 - 43808881
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtca 54  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  43808924 aatatcataaaaagactctaaaaataacgaataactaactgtca 43808881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 9380057 - 9380012
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatc 56  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||    
T  9380057 aatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 53815017 - 53814968
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaacc 60  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  53815017 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaacc 53814968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 16243212 - 16243166
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  16243212 aatatcataaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 54460413 - 54460367
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||    
T  54460413 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 49743785 - 49743825
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  49743785 ataaaaagactctaaaaataactaatgactgactgtcatca 49743825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 41976367 - 41976321
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||| ||||||| |||||||||||| ||||| ||||||||||||||    
T  41976367 aatattataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 538062 - 538014
Alignment:
Q  11 aatatcat-aaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||| ||||||||||||||||||  |||| |||||||||||||||    
T  538062 aatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaa 538014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 20729430 - 20729478
Alignment:
Q  11 aatatcataaaaaga-ctctaaaaataacgaataactgactgtcatcaa 58  Q
    ||||||||||||| | ||||||||||| ||||| |||||||||||||||    
T  20729430 aatatcataaaaaaaactctaaaaatagcgaatgactgactgtcatcaa 20729478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 43926164 - 43926124
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  43926164 ataaaaagactctaaaaatagcgaatgacggactgtcatca 43926124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 4834 - 4880
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  4834 aatatcataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 28666130 - 28666176
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  28666130 aatatcataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 10289232 - 10289186
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  10289232 aatatcataaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 2378475 - 2378435
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  2378475 ataaaaagactctaaaaatagcgaatgacggactgtcatca 2378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 15543255 - 15543215
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  15543255 ataaaaagactctaaaaatagcgaatgacggactgtcatca 15543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 43722950 - 43722903
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||    
T  43722950 aatatcataaaaagactctaaaaataacgaatgattgactgtcatcaa 43722903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 13972767 - 13972813
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  13972767 aatatcataaaaagactctaaaaataacgaatgattgactgtcatca 13972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 5665876 - 5665829
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||||    
T  5665876 aatatcataaaaagactctaaaaatagcgaatgattgactgtcatcaa 5665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 3874528 - 3874482
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||||    
T  3874528 aatatcctaaaaagactctaaaaataatgaatgactgactgtcatca 3874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 9189532 - 9189572
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  9189532 ataaaaagactctaaaaatagcgaatgactgactgtcatca 9189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 13136808 - 13136764
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcat 55  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||    
T  13136808 aatatcataaaatgactctaaaaataacaaatgactgactgtcat 13136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 31586785 - 31586825
Alignment:
Q  19 aaaaagactctaaaaataacgaataactgactgtcatcaac 59  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  31586785 aaaaagactctaaaaatagcgaatgactgactgtcatcaac 31586825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 37280556 - 37280596
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  37280556 ataaaaagactctaaaaatagcgaatgactgactgtcatca 37280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 38014680 - 38014636
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||    
T  38014680 tatcataaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 43208769 - 43208809
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  43208769 ataaaaagactctaaaaatagcgaatgactgactgtcatca 43208809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 6826020 - 6825974
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||||| |||| ||||||||| | ||||||||||||    
T  6826020 aatatcataaaaagactttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 10599997 - 10599951
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||| ||||||||||  |||| ||||||||||||||    
T  10599997 aatatcataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 25869882 - 25869833
Alignment:
Q  11 aatatcat-aaaaagactctaaaaataacgaataactgactgtcatcaac 59  Q
    |||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  25869882 aatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaac 25869833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 40780698 - 40780657
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||| ||||| | |||||||||||||    
T  40780698 ataaaaagactctaaaaatagcgaatgattgactgtcatcaa 40780657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 8887882 - 8887842
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  8887882 ataaaaagactctaaaaatagcgaatgacggactgtcatca 8887842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 9186303 - 9186343
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| ||| ||||||||||    
T  9186303 ataaaaagactctaaaaatagcgaatgactaactgtcatca 9186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 25957323 - 25957363
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  25957323 ataaaaagactctaaaaatagcgaatgacggactgtcatca 25957363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 31430594 - 31430638
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||| | ||| ||| ||||||||||    
T  31430594 tatcataaaaagactctaaaaatagcaaatgactaactgtcatca 31430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 4609 - 4559
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaacca 61  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  4609 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaacca 4559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 4596878 - 4596924
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  4596878 aatatcataaaaagactctaaaaataacgaatgattgactgtcatca 4596924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 9865596 - 9865642
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  9865596 aatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 9080417 - 9080375
Alignment:
Q  16 cataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  9080417 cataaaaagactctaaaaataacgaatgactaactgtcatcaa 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 45288092 - 45288138
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||    
T  45288092 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 45291428 - 45291474
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||    
T  45291428 aatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 11951276 - 11951317
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  11951276 ataaaaagactctaaaaataacgaatgacggactgtcatcaa 11951317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 37167030 - 37167070
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  37167030 ataaaaagactctaaaaatagcgaatgactgactgtcatca 37167070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 20081594 - 20081641
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    ||||||||||||| ||||||||||||  |||| |||||||||||||||    
T  20081594 aatatcataaaaacactctaaaaatagtgaatgactgactgtcatcaa 20081641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 4694769 - 4694723
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  4694769 aatatcatagaaagactctaaaaataacaaatgactgactttcatca 4694723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 8276058 - 8276012
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||    
T  8276058 aatatcataaaaagactctaaaaatatggaatgacagactgtcatca 8276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 24045011 - 24045057
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  24045011 aatatcaaaaaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 52007385 - 52007431
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  52007385 aatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 12782152 - 12782105
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  12782152 aatatcataaaatgactctaaaaatagcgaatgactgactgtcatcaa 12782105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 19819996 - 19819950
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  19819996 aatatcataaaaagactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 19826743 - 19826701
Alignment:
Q  15 tcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  19826743 tcataaaaagactctaaaaatagcgaatgactgactgtcatca 19826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 53010412 - 53010458
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  53010412 aatatcataaaaagactctaaaaataatgaatgactgactatcatca 53010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 38284375 - 38284416
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  38284375 ataaaaagactctaaaaatagcgaatgactgactgtcatcaa 38284416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 44809860 - 44809905
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||    
T  44809860 tatcataaaaagactctaaaaatagcaaatgactgactgtcatcaa 44809905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 29324023 - 29323979
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||    
T  29324023 tatcataaaaagactctaaaaatagcaaatgactgactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 48636749 - 48636709
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  48636749 ataaaaagactctaaaaataacgaatgacagactgtcatca 48636709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 15430719 - 15430766
Alignment:
Q  11 aatatcataaaa-agactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  15430719 aatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15430766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 15437333 - 15437380
Alignment:
Q  11 aatatcataaaa-agactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  15437333 aatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 27013276 - 27013229
Alignment:
Q  11 aatatcataaaaa-gactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  27013276 aatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 27677919 - 27677966
Alignment:
Q  11 aatatcataaaa-agactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||| ||||||||||||||  |||||||||||||||||||    
T  27677919 aatatcataaaaaagactctaaaaatagtgaataactgactgtcatca 27677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 15431211 - 15431161
Alignment:
Q  11 aatatcat-aaaaagactctaaaaataacgaataactgactgtcatcaacc 60  Q
    |||||||| ||||||||||||||||||  |||| |||||||||||||||||    
T  15431211 aatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaacc 15431161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 15437825 - 15437775
Alignment:
Q  11 aatatcat-aaaaagactctaaaaataacgaataactgactgtcatcaacc 60  Q
    |||||||| ||||||||||||||||||  |||| |||||||||||||||||    
T  15437825 aatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaacc 15437775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 40794238 - 40794200
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgac 49  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  40794238 aatatcataaaaagactctaaaaatagcgaatgactgac 40794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 34018659 - 34018699
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  34018659 ataaaaagactctaaaaatagcgaatgacggactgtcatca 34018699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 48416408 - 48416448
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  48416408 ataaaaagactctaaaaatagcgaatgacggactgtcatca 48416448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 25329502 - 25329455
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  25329502 aatatcataaaaaaactctaaaaatagcgaatgactgactgtcatcaa 25329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 7270287 - 7270241
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||    
T  7270287 aatatcataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 28788355 - 28788401
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| | ||| ||||||||||||||    
T  28788355 aatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 30065608 - 30065562
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||||    
T  30065608 aatatcataaaaagactctaaaaataacgaatgaatgattgtcatca 30065562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 14016992 - 14017036
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||    
T  14016992 tatcataaaaagactctaaaaatagcaaatgactgactgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 17747661 - 17747617
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||| | ||| ||||||||||||||    
T  17747661 tatcataaaaagactctaaaaatagcaaatgactgactgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 26753580 - 26753620
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  26753580 ataaaaagactctaaaaataacgaatgacggactgtcatca 26753620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 41307405 - 41307445
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  41307405 ataaaaagactctaaaaatagcgaatgactgactgtcatca 41307445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 21827994 - 21828041
Alignment:
Q  11 aatatcataaaa-agactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  21827994 aatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 39191375 - 39191333
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcat 55  Q
    |||||||||||||||||||||||||| ||| | ||||||||||    
T  39191375 tatcataaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 4100391 - 4100431
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgt 52  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  4100391 aatatcataaaaagactct-aaaatagcgaataactgactgt 4100431  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 2404768 - 2404722
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  2404768 aatattataaaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 23022803 - 23022843
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  23022803 ataaaaagactctaaaaataacgaatgacggactgtcatca 23022843  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 45940661 - 45940621
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  45940661 ataaaaagactctaaaaatagcgaatgactgactgtcatca 45940621  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 21108347 - 21108394
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||| ||||||||||||| | ||||| |||||||||||||||    
T  21108347 aatatcataagaagactctaaaaagagcgaatgactgactgtcatcaa 21108394  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 41059187 - 41059234
Alignment:
Q  11 aatatcataaaa-agactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  41059187 aatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 42021767 - 42021720
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    ||||| |||||||||||||||||||| ||||| | |||||||||||||    
T  42021767 aatattataaaaagactctaaaaatagcgaatgattgactgtcatcaa 42021720  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 21019322 - 21019367
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  21019322 aatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 21019367  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 28110323 - 28110282
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||| ||||| || ||||||||||||    
T  28110323 ataaaaagactctaaaaatagcgaatgacggactgtcatcaa 28110282  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 37184743 - 37184783
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  37184743 ataaaaagactctaaaaatagcgaatgacggactgtcatca 37184783  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 45961663 - 45961707
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||| ||||||||||||||| | ||| ||||||||||||||    
T  45961663 tatcataacaagactctaaaaatagcaaatgactgactgtcatca 45961707  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 18826790 - 18826835
Alignment:
Q  13 tatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||    
T  18826790 tatcataaaaagactctaaaaatagcaaatgactgactgtcatcaa 18826835  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 16953038 - 16952997
Alignment:
Q  17 ataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    |||||||||||||||||||| ||||| || ||||||||||||    
T  16953038 ataaaaagactctaaaaatagcgaatgacggactgtcatcaa 16952997  T

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Target: scaffold0381 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 6507 - 6554
Alignment:
Q  11 aatatcataaaa-agactctaaaaataacgaataactgactgtcatca 57  Q
    |||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  6507 aatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

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Target: scaffold0270 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 4374 - 4421
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    ||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  4374 aatatcataaaaagactctaaaagtagcgaatgactgactgacatcaa 4421  T

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Target: scaffold0270; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 11504 - 11551
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatcaa 58  Q
    ||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  11504 aatatcataaaaagactctaaaagtagcgaatgactgactgacatcaa 11551  T

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Target: scaffold0270; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 1014 - 1060
Alignment:
Q  11 aatatcataaaaagactctaaaaataacgaataactgactgtcatca 57  Q
    ||||||||||||| ||||||||| || ||||| ||||||||||||||    
T  1014 aatatcataaaaatactctaaaagtagcgaatgactgactgtcatca 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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