View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_24 (Length: 365)
Name: NF16929_low_24
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 187 - 342
Target Start/End: Original strand, 12534476 - 12534628
Alignment:
| Q |
187 |
gtatgatgttttaggtgcctttgagcaattgctaggtgcctaaaaagcaatctccaataactaacacaacaattcataaatcccaatatactactactcc |
286 |
Q |
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| T |
12534476 |
gtatgatgttttaggtgcctttgagcaattgctaggtggctaaagagcaatctccaataaccaacgcaacaattcataaatcctaata---tactactcc |
12534572 |
T |
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| Q |
287 |
caagctttcaagtatgcaagccaaaagccattcatttactataatttctaaatcca |
342 |
Q |
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| T |
12534573 |
caagctttcgagtatgcaagccaaaagccattcatttactataatttctaaatcca |
12534628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 12532216 - 12532320
Alignment:
| Q |
28 |
cgtgttaatacaattatttttcattcnnnnnnntaaaataccgttcaacactttttatattggttaaataactttttaaatcagttt-accgatttaaaa |
126 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12532216 |
cgtgttaatacaattatttttcattcaaaaaaataaaataccgttcaacactttttatattggttaaataactttttaaatcagtttaaccgatttaaaa |
12532315 |
T |
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| Q |
127 |
aatgt |
131 |
Q |
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||||| |
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| T |
12532316 |
aatgt |
12532320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 27926699 - 27926661
Alignment:
| Q |
200 |
ggtgcctttgagcaattgctaggtgcctaaaaagcaatc |
238 |
Q |
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| T |
27926699 |
ggtgcctgtgagcaattgctaggtgcctaaagagcaatc |
27926661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 25104262 - 25104295
Alignment:
| Q |
194 |
gttttaggtgcctttgagcaattgctaggtgcct |
227 |
Q |
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| T |
25104262 |
gttttaggtgcctttgagcaattactaggtgcct |
25104295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 25163355 - 25163388
Alignment:
| Q |
194 |
gttttaggtgcctttgagcaattgctaggtgcct |
227 |
Q |
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| T |
25163355 |
gttttaggtgcctttgagcaattactaggtgcct |
25163388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 48423382 - 48423342
Alignment:
| Q |
197 |
ttaggtgcctttgagcaattgctaggtgcctaaaaagcaat |
237 |
Q |
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| T |
48423382 |
ttaggtgcatgtgagcaattgctaggtgcctaaagagcaat |
48423342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 37390619 - 37390583
Alignment:
| Q |
202 |
tgcctttgagcaattgctaggtgcctaaaaagcaatc |
238 |
Q |
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| T |
37390619 |
tgcctgtgagcaattgctaggtgcctaaagagcaatc |
37390583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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