View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_low_28 (Length: 345)

Name: NF16929_low_28
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_low_28
NF16929_low_28
[»] chr8 (3 HSPs)
chr8 (166-327)||(40708023-40708184)
chr8 (37-138)||(40707898-40707999)
chr8 (29-83)||(45042087-45042141)
[»] chr5 (5 HSPs)
chr5 (29-111)||(4715437-4715519)
chr5 (13-111)||(9476115-9476213)
chr5 (29-111)||(32048592-32048674)
chr5 (29-96)||(4392385-4392452)
chr5 (29-111)||(11141717-11141799)
[»] chr4 (2 HSPs)
chr4 (29-107)||(15605045-15605123)
chr4 (13-124)||(20011593-20011704)
[»] chr6 (1 HSPs)
chr6 (13-136)||(33139497-33139620)
[»] chr3 (1 HSPs)
chr3 (13-124)||(7924908-7925019)
[»] scaffold0838 (1 HSPs)
scaffold0838 (29-111)||(3823-3905)
[»] scaffold0832 (1 HSPs)
scaffold0832 (29-111)||(3854-3936)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 166 - 327
Target Start/End: Original strand, 40708023 - 40708184
Alignment:
Q  166 tgaaggactagtccaatttccaaaggaagaatataaggcgtggtattnnnnnnnnnnnnnnnnnnnnnntgaaaggcgttgtttactccaaacctggtcc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||||||||||||    
T  40708023 tgaaggactagtccaatttccaaaggaagaatataaggcgtggtatttaaataaaaataaaaataaaaatgaaaggcgttgtttactccaaacctggtcc 40708122  T
Q  266 acccattttgtgatgctgatgaaccttaacatcatctctcactttattattggggaagcatg 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40708123 acccattttgtgatgctgatgaaccttaacatcatctctcactttattattggggaagcatg 40708184  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 40707898 - 40707999
Alignment:
Q  37 tggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtcattgcataaacaaagagacactaagt 136  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||    
T  40707898 tggtaagaagctacaactagtagcttttcaatatcacggtgaaaatgggttaaaatgtgctgcagcggtgggtcattgcataaacaaacagacactaagt 40707997  T
Q  137 gt 138  Q
    ||    
T  40707998 gt 40707999  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 45042141 - 45042087
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatg 83  Q
    |||||||||| |||||||||||||||| |||||||||| |||||| |||||||||    
T  45042141 atcacgtttgataagaagctacaactagtagcttttcattatcacggtgaaaatg 45042087  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 4715519 - 4715437
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtca 111  Q
    |||||||| | |||||||||| |||||||| ||||||| |||||| |||||||||||| ||||||| ||| ||||||||||||    
T  4715519 atcacgttcgataagaagctataactaataacttttcattatcacggtgaaaatgggtgaaaacgtactgtagcggtgggtca 4715437  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 9476115 - 9476213
Alignment:
Q  13 aatatcacggtgaattatcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtca 111  Q
    ||||||||||| ||  |||||||||| ||||||||||||| || |||||||||| |||||| |||||||||||| |||| |||| | || |||||||||    
T  9476115 aatatcacggtcaacaatcacgtttgataagaagctacaattagtagcttttcattatcacggtgaaaatgggtgaaaatgtgcggcagtggtgggtca 9476213  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 32048674 - 32048592
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtca 111  Q
    |||||||||| ||||||||| |||||| |||||||||| |||||| |||||||||| | ||| ||||  | ||||||||||||    
T  32048674 atcacgtttgataagaagctgcaactagtagcttttcattatcacggtgaaaatggatgaaagcgtgtggcagcggtgggtca 32048592  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 4392385 - 4392452
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgc 96  Q
    |||||||||| |||||||||||||||| | | |||||| |||||| ||||| |||||| |||||||||    
T  4392385 atcacgtttgataagaagctacaactagtggtttttcattatcactgtgaatatgggtgaaaacgtgc 4392452  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 11141717 - 11141799
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtca 111  Q
    |||||||||| ||||||| |||||||| ||| |||| | |||||| ||||||||| || |||| |||| | ||||||||||||    
T  11141717 atcacgtttgataagaagttacaactagtagttttttattatcaccgtgaaaatgagtgaaaaagtgcggcagcggtgggtca 11141799  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 15605045 - 15605123
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgg 107  Q
    |||||||| ||||||||| |||||| |||||||||||| ||||   || ||||||||||||||||||||| ||||||||    
T  15605045 atcacgttcggtaagaagttacaaccaatagcttttcattatcgtggtaaaaatgggttaaaacgtgctgcagcggtgg 15605123  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 20011704 - 20011593
Alignment:
Q  13 aatatcacggtgaattatcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtcat 112  Q
    |||||||||||||||  ||||||| | ||||||||||||||||  |||||||| | ||||| ||| |||| | | ||||||||| | |||||| |||||     
T  20011704 aatatcacggtgaatagtcacgttggataagaagctacaactagcagcttttctaaatcacggtggaaatagatcaaaacgtgcagtagcggtaggtcac 20011605  T
Q  113 tgcataaacaaa 124  Q
    || |||||||||    
T  20011604 tggataaacaaa 20011593  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 33139620 - 33139497
Alignment:
Q  13 aatatcacggtgaattatcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtcat 112  Q
    |||||||||||||||  ||||||| | |||||||||||  ||| ||| ||||| | ||||| |||||||| | ||| ||||||| | |||||| |||||     
T  33139620 aatatcacggtgaatagtcacgttggataagaagctacggctagtagtttttctaaatcacggtgaaaatagattacaacgtgcggtagcggtaggtcac 33139521  T
Q  113 tgcataaacaaagagacactaagt 136  Q
    || ||||||||| || ||||||||    
T  33139520 tggataaacaaacaggcactaagt 33139497  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 7925019 - 7924908
Alignment:
Q  13 aatatcacggtgaattatcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtcat 112  Q
    |||||||||||||||  ||||||| | ||||||||||||||||  |||||||| | ||||| ||| |||| | | ||||||||| | |||||| |||||     
T  7925019 aatatcacggtgaatagtcacgttggataagaagctacaactagcagcttttctaaatcactgtggaaatagatcaaaacgtgcagtagcggtaggtcac 7924920  T
Q  113 tgcataaacaaa 124  Q
    || |||||||||    
T  7924919 tggataaacaaa 7924908  T

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Target: scaffold0838 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 3823 - 3905
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtca 111  Q
    |||||||||| |||||||||||||||| ||| |||| | |||||  |||||||||||| ||||| ||| | ||||||||||||    
T  3823 atcacgtttgataagaagctacaactagtagatttttattatcaaggtgaaaatgggtgaaaacatgcggcagcggtgggtca 3905  T

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Target: scaffold0832 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 3854 - 3936
Alignment:
Q  29 atcacgtttggtaagaagctacaactaatagcttttcaatatcacagtgaaaatgggttaaaacgtgctggagcggtgggtca 111  Q
    |||||||||| |||||||||||||||| ||| |||| | |||||  |||||||||||| ||||| ||| | ||||||||||||    
T  3854 atcacgtttgataagaagctacaactagtagatttttattatcaaggtgaaaatgggtgaaaacatgcggcagcggtgggtca 3936  T

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