View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16929_low_30 (Length: 334)

Name: NF16929_low_30
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16929_low_30
NF16929_low_30
[»] chr4 (1 HSPs)
chr4 (12-317)||(34199644-34199952)
[»] scaffold1152 (1 HSPs)
scaffold1152 (123-318)||(1829-2027)
[»] chr7 (1 HSPs)
chr7 (202-317)||(40812130-40812248)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 317
Target Start/End: Complemental strand, 34199952 - 34199644
Alignment:
Q  12 atgaaacatgcaagcaaaaatgaaaatagtagaatggaatagaatacctagaagaacgtctttcagattcgttggatggtaacgagtttttcttgacgga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34199952 atgaaacatgcaagcaaaaatgaaaatagtagaatggaatagaatacctagaagaacgtctttcagattcgttggatggtaacgagtttttcttgacgga 34199853  T
Q  112 ggggcgcggttttggtgttttcttgaggttacaagaaagctttaacaaaccaagcttatgcattctctcagcgttctctttcatcctttgttccctaatc 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34199852 ggggcgcggttttggtgttttcttgaggttaccagaaagctttaacaaaccaagcttatgcattctctcagcgttctcttccatcctttgttccctaatc 34199753  T
Q  212 cgttcgtaatgcgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttcggtgatg---gcgccgccatcttcaccgt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||    
T  34199752 cgttcgtaatgcgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttcggtggtggctgcgccgccatcttcaccgt 34199653  T
Q  309 cagaagaag 317  Q
    |||||||||    
T  34199652 cagaagaag 34199644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1152 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 123 - 318
Target Start/End: Complemental strand, 2027 - 1829
Alignment:
Q  123 ttggtgttttcttgaggttacaagaaagctttaacaaaccaagcttatgcattctctcagcgttctctttcatcctttgttccctaatccgttcgtaatg 222  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||     
T  2027 ttggtgttttcttgaggttaccagaaagctttaacaatccaagcttatgcattctctcagcgttctctttcatcctttgttccctaatctattcgtaata 1928  T
Q  223 cgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttcggtgatggc---gccgccatcttcaccgtcagaagaagt 318  Q
     |||||||||||  |||| |||||||||| |||||||| ||||||| ||||||||||||||||| ||||   || ||||||||||| || |||||||||    
T  1927 tgatgatgaacccaaaactacaacacctttgtcaccgtcagttttcgccgttttggtttcggtggtggctgggctgccatcttcacggttagaagaagt 1829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 40812248 - 40812130
Alignment:
Q  202 ttccctaatccgttcgtaatgcgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttc---ggtgatggcgccgcca 298  Q
    |||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||||   |||| | |||| ||||    
T  40812248 ttccctaatctgttcgtaatgtgatgatgaaccagaaacggcaacaccttcgtcaccgtcagttttcgccgttttggtttcgttggtggttgcgctgcca 40812149  T
Q  299 tcttcaccgtcagaagaag 317  Q
    |||||||||||||||||||    
T  40812148 tcttcaccgtcagaagaag 40812130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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