View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_32 (Length: 303)
Name: NF16929_low_32
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 46611658 - 46611941
Alignment:
| Q |
1 |
agacaaaccttggataaatttgcagcaccgagattagcgtgttcgagtgctttcttaccggcgacaatgcagtaccggagacaatcatcgagtcgccggt |
100 |
Q |
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| T |
46611658 |
agacaaaccttggataaatttgcagcaccgagattagcgtgttcgagtgctttcttaccggcgacaatgcagtaccggagacaatcatcgagtctccggt |
46611757 |
T |
|
| Q |
101 |
cattcttcccgtcaatgtaaccctcagaactgaagtcacggatctgaccagcgaatcgagttgggaatttggaagcatcaaatctatcaatggaagtgat |
200 |
Q |
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| T |
46611758 |
cattcttcccgtcaatgtaaccctcagaactgaagtcacggatctgaccagcgaatcgagttgggaatttggaagcatcaaatctatcaatggaagtgat |
46611857 |
T |
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| Q |
201 |
accactctcaccagcgagaagcttatcatagtaagcatcaacgtcatttccaaacaccgaagcaagacccataccggtaatcac |
284 |
Q |
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| T |
46611858 |
accactctcaccagcgagaagcttatcatagtaagcatcaacgtcatttccaaacaccgaagcaagacccataccggtaatcac |
46611941 |
T |
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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 38471790 - 38471591
Alignment:
| Q |
25 |
gcaccgagattagcgtgttcgagtgctttcttaccggcgacaatgcagtaccggagacaatcatcgagtcgccggtcattcttcccgtcaatgtaaccct |
124 |
Q |
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||||||||| ||| | ||| ||||||||||| ||||||||| |||||||||||||||||||||| | | |||||||||||||||||| |||||||||| |
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| T |
38471790 |
gcaccgagaccagcatcttcaagtgctttcttcccggcgacattgcagtaccggagacaatcatcctgcctccggtcattcttcccgtcgatgtaaccct |
38471691 |
T |
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| Q |
125 |
cagaactgaagtcacggatctgaccagcgaatcgagttgggaatttggaagcatcaaatctatcaatggaagtgataccactctcaccagcgagaagctt |
224 |
Q |
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| T |
38471690 |
cggagctaaacccacggatctgaccagcgaaccgagtagggaatttggaagcatcaaacctatcaatcaatgtgatcccactatcaccggcgagaagctt |
38471591 |
T |
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