View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_33 (Length: 296)
Name: NF16929_low_33
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 39840950 - 39840684
Alignment:
| Q |
19 |
accccgggcatgacacaggcatgctgttctgaaatatcaaaatgtcaaacatgaacatattcaggacaggacgcacgctaaacgtggtaaaattaaaaac |
118 |
Q |
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| T |
39840950 |
acccggggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatgaacatattcagaacaggacgcacgctaaacatggcaaa-ttaaaaac |
39840852 |
T |
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| Q |
119 |
cccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggtggaaagcattgctagctatgaaataatttgagacgcaaagaaa |
218 |
Q |
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| T |
39840851 |
cccaaatgacaagctacgaaaaaatgaggctaaacatatggtatggtaaagggggatggaaagcattgctagctgtgaaataatttgagatgcaaagaaa |
39840752 |
T |
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| Q |
219 |
aatattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttg |
286 |
Q |
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| T |
39840751 |
aatattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttg |
39840684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 35162688 - 35162427
Alignment:
| Q |
24 |
gggcatgacacaggcatgctgttctgaaatatcaaaatgtcaaacatgaacatattcaggacaggacgcacgctaaacgtggtaaaattaaaaaccccaa |
123 |
Q |
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| T |
35162688 |
gggcatgacacaggcatgctgttctgaaatatcaaaatgtcaagcatgaacatattcaggacaggacgcacgctaaacgtggcaaa-ttaaaaaccccaa |
35162590 |
T |
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| Q |
124 |
atgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggtggaaagcattgctagctatgaaataatttgagacgcaaagaaaaatat |
223 |
Q |
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| T |
35162589 |
atgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggagtggaaagcattgctatgtatgaaataatttgagatgcaaagaaacattt |
35162490 |
T |
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| Q |
224 |
tgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctttg |
286 |
Q |
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| T |
35162489 |
tgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtactggtccctttg |
35162427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 284
Target Start/End: Original strand, 44797422 - 44797685
Alignment:
| Q |
24 |
gggcatgacacaggcatgctgttctgaaatatcaaaatgtcaaacatgaacatattcaggacaggacgcacgctaaacgtggtaaaattaaaaaccccaa |
123 |
Q |
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| T |
44797422 |
gggcaagacacaggcatgctgttctgaaatatcaaaatgtcaagcatgaacatattcaggacaggacgcacgctaaacgtggcaaa-ttaaaaaccccaa |
44797520 |
T |
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| Q |
124 |
atgacaagctacgaaaaaatgaggctaaacatatggtatggtaaagggg----ggtggaaagcattgctagctatgaaataatttgagacgcaaagaaaa |
219 |
Q |
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| T |
44797521 |
atgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggggggtggaaagcattgctatgtatcaaataatttgagatgcaaagaaac |
44797620 |
T |
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| Q |
220 |
atattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctt |
284 |
Q |
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| T |
44797621 |
atattgaaaaaatgagaaacaatctggtgataagattaaaataaattaccaagtactggtccctt |
44797685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 39845914 - 39845653
Alignment:
| Q |
24 |
gggcatgacacaggcatgctgttctgaaatatcaaaatgtcaaacatgaacatattcaggacaggacgcacgctaaacgtggtaaaattaaaaaccccaa |
123 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
39845914 |
gggcatgacacaggcatgctgttcagaaatatcaaaatgtcaagcatgaacatattcaggacaggacgcacgctaaacgtggcaaatt--aaaaccccaa |
39845817 |
T |
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| Q |
124 |
atgacaagctacgaaaaaatgaggctaaacatatggtatggtaaaggggggtggaaagcattgct---agctatgaaataatttgagacgcaaagaaaaa |
220 |
Q |
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| T |
39845816 |
atgacaagctgcgaaaaaatgaggctaaacatgtggtatggtaaaggggggtggaaagcattgctgctatgtatgaaataatttcagatgcaaagaaaca |
39845717 |
T |
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| Q |
221 |
tattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtgctggtccctt |
284 |
Q |
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| T |
39845716 |
tattgaaaaaatgacaaacaatctggtgataagattaaaataaattaccaagtactggtccctt |
39845653 |
T |
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