View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_35 (Length: 279)
Name: NF16929_low_35
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 31440949 - 31441212
Alignment:
| Q |
1 |
taactttaaatcagaaaactactgcctacagctaatgtactcattagaagatccaaactccttgtaagaaagctccaacttcttatccagaaactcatca |
100 |
Q |
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| T |
31440949 |
taactttaaatcagaaaactactgcctacagctaatgtactcagtagaagatccaaactccttgtaagaaagctccaacttcttatccagaaactcatca |
31441048 |
T |
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| Q |
101 |
tcaagctaaactcaactttctcattagaagatattagccagcttgatttcttttcttttttaggaattgatgtggaacacttatctaatggattcatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31441049 |
tcaagctaaactcaactttctcattagaagatattagccagcttgatttcttttcttttttaggaattgatgtggaacacttatctaatggattcagagt |
31441148 |
T |
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| Q |
201 |
ctcatagactctcaaagtatgtctccaactacactgcaaatcctactttctattagtccttagt |
264 |
Q |
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| T |
31441149 |
ctcatagactctcaaagtatgtctccaactacactgcaaatcctactttctattagtccttagt |
31441212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 33376048 - 33375978
Alignment:
| Q |
1 |
taactttaaatcagaaaactactgcctacagctaatgtactcattagaagatccaaactccttgtaagaaa |
71 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33376048 |
taactttaaatcagaaaactactgcctacagctaatgtactcattagaagatccaaactcgttgtaagaaa |
33375978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 33375885 - 33375824
Alignment:
| Q |
202 |
tcatagactctcaaagtatgtctccaactacactgcaaatcctactttctattagtccttag |
263 |
Q |
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|||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||| |
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| T |
33375885 |
tcatagactctctaagtatgtctcatactacactgcaaattctactttcttttagtccttag |
33375824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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