View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16929_low_38 (Length: 269)
Name: NF16929_low_38
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_38 |
 | |
|
| [»] chr3 (32 HSPs) |
| |
|
| [»] scaffold0425 (2 HSPs) |
| | |
|
| [»] scaffold1643 (1 HSPs) |
| | |
|
| [»] scaffold2053 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 32)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 5296617 - 5296875
Alignment:
| Q |
11 |
tagctttgaacaatatctcaactcgagatggtcaagagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| || ||||| |||||||||||||| || ||||||||| |
|
|
| T |
5296617 |
tagctttgaacaatatctcaactcgagatggtcaagagtcagtggaagcaaactctcctccgggaatgactccatgttttcaaagtcatcgctaacaatg |
5296716 |
T |
|
| Q |
111 |
aattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatcagtttgggacatctgtatatatggaggatgcttaggctagaaggca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
5296717 |
aattctttcagagaattgagttggaacaacccccacttctctctcgaagctatcagtttgggacatctgaatatatggaggatgcttaggtgagaaggca |
5296816 |
T |
|
| Q |
211 |
aaccttcactggaaaatgattctatcatcggacaatcttccaactttagagaatgaaga |
269 |
Q |
| |
|
|||| || | | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5296817 |
aaccatcccaaggaaatgattctatcatcggacaatcttccaactttagagaatgaaga |
5296875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 208
Target Start/End: Complemental strand, 6724182 - 6724039
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||||||||||||||||| | ||| ||| || ||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||| || |
|
|
| T |
6724182 |
ctcctccggaaaggactctaagatttgaaaatcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctcgaagccatt |
6724083 |
T |
|
| Q |
165 |
agtttgggacatctgtatatatggaggatgcttaggctagaagg |
208 |
Q |
| |
|
| ||| |||||||| | ||| ||||| ||| |||||| ||||| |
|
|
| T |
6724082 |
aatttaggacatctttctattcggaggctgcataggctggaagg |
6724039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 6593456 - 6593310
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||||||||||||||| | | ||| ||| || ||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||| || |
|
|
| T |
6593456 |
ctcctccggaaaggactccaagatttgaaaatcatcactaacactgaattgtttcagagaatcgagttggaacaaaccccactcctctctcgaagccatt |
6593357 |
T |
|
| Q |
165 |
agtttgggacatctgtatatatggaggatgcttaggctagaaggcaa |
211 |
Q |
| |
|
| ||| |||||||| | ||| ||||| ||| |||| | |||||||| |
|
|
| T |
6593356 |
aatttaggacatctttctattcggaggctgcataggttggaaggcaa |
6593310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 6898017 - 6898127
Alignment:
| Q |
68 |
ctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatcagt |
167 |
Q |
| |
|
||||||||||||||| | | ||||||| || ||||| ||| |||| | |||||||||||||||||||||||||||||||| |||||||||||| |||| | |
|
|
| T |
6898017 |
ctccggaaaggactccaagatttcaaaatcatcacttacactgaactgtttcagagaattgagttggaacaaaccccactcctctctcgaagccatcaat |
6898116 |
T |
|
| Q |
168 |
ttgggacatct |
178 |
Q |
| |
|
|| |||||||| |
|
|
| T |
6898117 |
ttaggacatct |
6898127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 6880442 - 6880542
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||||||||||||||| | | |||| || || |||| |||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
6880442 |
ctcctccggaaaggactccaagatttccaaatcatcaccaacactgaattgtttcagagaattgagttggaacaaaccccactcctctctcgaagccatc |
6880541 |
T |
|
| Q |
165 |
a |
165 |
Q |
| |
|
| |
|
|
| T |
6880542 |
a |
6880542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 7747928 - 7748041
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||||||||||||||| | | ||||||| || ||||||||| |||| ||| ||||| |||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
7747928 |
ctcctccggaaaggactccaagatttcaaaatcatcactaacacataattgttttagagatttgagttggaacaaaccccactcctctctcgaagccatc |
7748027 |
T |
|
| Q |
165 |
agtttgggacatct |
178 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
7748028 |
aatttaggacatct |
7748041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 8587829 - 8587962
Alignment:
| Q |
42 |
tcaagagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaac |
141 |
Q |
| |
|
|||||||||||||| |||| | |||||| || |||||||| | ||||||||| || |||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
8587829 |
tcaagagttggtggcagaagattctcctctgggaaggactccacgttttcaaactcatcactaactttgaaagattttagagaattgagttggaacaaac |
8587928 |
T |
|
| Q |
142 |
cccacttctctctcgaagctatcagtttgggaca |
175 |
Q |
| |
|
|||| | |||||||||||| |||||||| ||||| |
|
|
| T |
8587929 |
cccattgctctctcgaagcaatcagtttaggaca |
8587962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 5261843 - 5261954
Alignment:
| Q |
44 |
aagagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccc |
143 |
Q |
| |
|
|||||||||||| || | | ||||||||| || ||||| | || ||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5261843 |
aagagttggtggcagtagattctcctccgggaaagactccacattctcaaagtcgtcactaactttgaattctttcagagaattgagttcgaacaaaccc |
5261942 |
T |
|
| Q |
144 |
cacttctctctc |
155 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
5261943 |
cactcctctctc |
5261954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 4391016 - 4390912
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| || |||||||| | ||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||| | ||||| |||| || |
|
|
| T |
4391016 |
ctcctctgggaaggactccacattttcaaagtcatcaccaacaatgaaatcttttagagaattgagttggaacaaaccccactcccctctcaaagcaatt |
4390917 |
T |
|
| Q |
165 |
agttt |
169 |
Q |
| |
|
||||| |
|
|
| T |
4390916 |
agttt |
4390912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 6482086 - 6481982
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| |||||||| || | ||||||||| || |||||||| | || |||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
6482086 |
ctcctctggaaaggattccacgttttcaaactcatcactaactctaaactctttcagagaattgagttggaacaaaccccactcttctcttgaagcaatc |
6481987 |
T |
|
| Q |
165 |
agttt |
169 |
Q |
| |
|
||||| |
|
|
| T |
6481986 |
agttt |
6481982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 6243243 - 6243343
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| ||||||||||| | | ||||||| || ||||||| | |||||| ||||||||| |||||||||||||||||||||| |||| | ||||| ||| |
|
|
| T |
6243243 |
ctcctctggaaaggactcgaagatttcaaaatcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctctattgaagccatc |
6243342 |
T |
|
| Q |
165 |
a |
165 |
Q |
| |
|
| |
|
|
| T |
6243343 |
a |
6243343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 6257128 - 6257228
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| |||||||| || | | ||||||| |||||||||| | |||||| ||||||||| |||||||||||||||||||||| |||| | ||||| ||| |
|
|
| T |
6257128 |
ctcctctggaaaggattcgaagatttcaaaatcgtcactaagagtgaattgtttcagagatttgagttggaacaaaccccactcctctattgaagccatc |
6257227 |
T |
|
| Q |
165 |
a |
165 |
Q |
| |
|
| |
|
|
| T |
6257228 |
a |
6257228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 6945177 - 6945301
Alignment:
| Q |
45 |
agagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaacccc |
144 |
Q |
| |
|
||||||||||| || | | |||||| || || ||||| | ||||||||| || |||||||||| |||||| | ||||||||||||||||||||||||| |
|
|
| T |
6945177 |
agagttggtggcagcagattctcctctgggaacgactccacgttttcaaactcatcactaacaacgaattcaatgagagaattgagttggaacaaacccc |
6945276 |
T |
|
| Q |
145 |
acttctctctcgaagctatcagttt |
169 |
Q |
| |
|
||| |||||| ||| | |||||||| |
|
|
| T |
6945277 |
actcctctcttgaaccaatcagttt |
6945301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 7585800 - 7585904
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| || || ||||| | ||||||||| || ||||||||| ||| || |||||||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
7585800 |
ctcctctgggaacgactccacgttttcaaactcatcactaacaccgaaagctctcagagaattgagttggaacaaaccccactgctctctcaaagcaatc |
7585899 |
T |
|
| Q |
165 |
agttt |
169 |
Q |
| |
|
||||| |
|
|
| T |
7585900 |
agttt |
7585904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 5278591 - 5278694
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
||||||||| ||||| || ||| |||||||||| |||||||| |||| |||||||||||||| |||| |||||||||||||| || ||| || || ||| |
|
|
| T |
5278591 |
ctcctccgggaaggagtccatgctttcaaagtcatcactaactctgaactctttcagagaatttagttcgaacaaaccccactcctttcttgatgcaatc |
5278690 |
T |
|
| Q |
165 |
agtt |
168 |
Q |
| |
|
|||| |
|
|
| T |
5278691 |
agtt |
5278694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 6841691 - 6841567
Alignment:
| Q |
45 |
agagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaacccc |
144 |
Q |
| |
|
||||||||||| || | | |||||| || || ||||| | ||||||||| || ||||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
6841691 |
agagttggtggcagcagattctcctctgggaacgactccacgttttcaaactcatcactaacactgaaccatttcaaggaattgagttggaacaaacccc |
6841592 |
T |
|
| Q |
145 |
acttctctctcgaagctatcagttt |
169 |
Q |
| |
|
||| |||||||||| | |||||||| |
|
|
| T |
6841591 |
actcctctctcgaaccaatcagttt |
6841567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 6235973 - 6236068
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagc |
160 |
Q |
| |
|
|||||| |||||||| || | | ||||||| || ||||||||| | |||| ||| | ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
6235973 |
ctcctctggaaaggattccaagatttcaaaatcatcactaacactcaattgttttaaagatttgagttggaacaaaccccactcctctctcgaagc |
6236068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 6263608 - 6263695
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctct |
152 |
Q |
| |
|
|||||| |||||||| || | | ||||||| || ||||||| | |||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
6263608 |
ctcctctggaaaggattccaagatttcaaaatcatcactaagactgaattgtttcagagatttgagttggaacaaaccccactcctct |
6263695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 6450838 - 6450791
Alignment:
| Q |
122 |
agaattgagttggaacaaaccccacttctctctcgaagctatcagttt |
169 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
6450838 |
agaattgagttggaacaaaccccactcctctctcgaagcaatcagttt |
6450791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 6730766 - 6730719
Alignment:
| Q |
122 |
agaattgagttggaacaaaccccacttctctctcgaagctatcagttt |
169 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
6730766 |
agaattgagttggaacaaaccccactcctctctcgaagcaatcagttt |
6730719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 5265987 - 5266112
Alignment:
| Q |
44 |
aagagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccc |
143 |
Q |
| |
|
|||||||||||| || | | ||||||||| ||||| || | ||||||| ||| ||||||||| |||| || ||||||||| ||||||||||||||| |
|
|
| T |
5265987 |
aagagttggtggcagtagattctcctccgggaaggagtcaacattttcaaggtcatcactaacactgaaactttccagagaatttagttggaacaaaccc |
5266086 |
T |
|
| Q |
144 |
cacttctctctcgaagctatcagttt |
169 |
Q |
| |
|
|||| | |||||||||| || ||||| |
|
|
| T |
5266087 |
cactcccctctcgaagcaattagttt |
5266112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 6782081 - 6781956
Alignment:
| Q |
44 |
aagagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccc |
143 |
Q |
| |
|
|||||||||||| || | | |||||| || |||||||| | |||||||| || ||||||||| ||||||| || ||| ||||||||||||||||| |
|
|
| T |
6782081 |
aagagttggtggtagcagattctcctctgggaaggactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccc |
6781982 |
T |
|
| Q |
144 |
cacttctctctcgaagctatcagttt |
169 |
Q |
| |
|
|||| |||||||||| | |||||||| |
|
|
| T |
6781981 |
cactcctctctcgaaccaatcagttt |
6781956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 6140212 - 6140312
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| |||||||| || | | ||||||| || ||||||| | |||||| ||||||||| ||||||| |||||||||||||| |||| | ||||| ||| |
|
|
| T |
6140212 |
ctcctctggaaaggattccaagatttcaaaatcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctctattgaagccatc |
6140311 |
T |
|
| Q |
165 |
a |
165 |
Q |
| |
|
| |
|
|
| T |
6140312 |
a |
6140312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 6556818 - 6556714
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| || |||||||| | ||||||||| || ||| |||| |||| ||||| ||||||||||||||||||||||||| |||||||||| | ||| |
|
|
| T |
6556818 |
ctcctctgggaaggactccacgttttcaaactcatcagcaacagtgaaacatttcaaggaattgagttggaacaaaccccactcctctctcgaaccaatc |
6556719 |
T |
|
| Q |
165 |
agttt |
169 |
Q |
| |
|
||||| |
|
|
| T |
6556718 |
agttt |
6556714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 6782432 - 6782328
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| || |||||||| | ||||||||| || ||| |||||| ||| ||||| ||||||||||||||||||||||||| |||||| ||| | ||| |
|
|
| T |
6782432 |
ctcctctgggaaggactccacgttttcaaactcatcagtaacaaagaaagatttcaaggaattgagttggaacaaaccccactcctctcttgaaccaatc |
6782333 |
T |
|
| Q |
165 |
agttt |
169 |
Q |
| |
|
||||| |
|
|
| T |
6782332 |
agttt |
6782328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 6941865 - 6941969
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| || |||||||| | |||||||| || ||||||||| ||||||| || ||| ||||||||||||||||||||| |||||||||| | ||| |
|
|
| T |
6941865 |
ctcctctgggaaggactccacattttcaaactcatcactaacagagaattctaacaaggaactgagttggaacaaaccccactcctctctcgaaccaatc |
6941964 |
T |
|
| Q |
165 |
agttt |
169 |
Q |
| |
|
||||| |
|
|
| T |
6941965 |
agttt |
6941969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 13275500 - 13275420
Alignment:
| Q |
72 |
ggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctct |
152 |
Q |
| |
|
||||||||||| | | ||||||| || ||||||| | |||||| ||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
13275500 |
ggaaaggactcaaagatttcaaaatcatcactaagactgaattgtttcagagatttgagtttgaacaaaccccactcctct |
13275420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 6523606 - 6523484
Alignment:
| Q |
45 |
agagttggtggaagaaagtactcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaacccc |
144 |
Q |
| |
|
||||||||||| || | | |||||| || || ||||| | ||||||||| || |||||||||| ||| | | ||| ||||||||||||||||| |||| |
|
|
| T |
6523606 |
agagttggtggcagcagattctcctctgggaacgactccacgttttcaaactcatcactaacaaagaaatatctcaaggaattgagttggaacaaccccc |
6523507 |
T |
|
| Q |
145 |
acttctctctcgaagctatcagt |
167 |
Q |
| |
|
||| |||||||||| | |||||| |
|
|
| T |
6523506 |
actcctctctcgaaccaatcagt |
6523484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 6733661 - 6733707
Alignment:
| Q |
123 |
gaattgagttggaacaaaccccacttctctctcgaagctatcagttt |
169 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
6733661 |
gaattgagttggaacaaaccccactcctctctcgaaccaatcagttt |
6733707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 6915073 - 6915122
Alignment:
| Q |
111 |
aattctttcagagaattgagttggaacaaaccccacttctctctcgaagc |
160 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
6915073 |
aattgttttagagaattgagttggaacaaaccccactcctctctagaagc |
6915122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 8469489 - 8469589
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatc |
164 |
Q |
| |
|
|||||| || |||||||||| ||||||||| || || ||||||| |||| ||||| ||||||||| |||||||||||||| || |||| |||| ||| |
|
|
| T |
8469489 |
ctcctctgggaaggactctacgttttcaaactcatcgctaacaaagaatgatttcaaggaattgagtctgaacaaaccccactcctgtctcaaagcaatc |
8469588 |
T |
|
| Q |
165 |
a |
165 |
Q |
| |
|
| |
|
|
| T |
8469589 |
a |
8469589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 6166846 - 6166923
Alignment:
| Q |
88 |
tttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatca |
165 |
Q |
| |
|
||||||| || ||||||| | | |||| ||||||||| ||||||| |||||||||||||| |||| | ||||| |||| |
|
|
| T |
6166846 |
tttcaaaatcatcactaagacttaattgtttcagagatttgagtttgaacaaaccccactcctctattgaagccatca |
6166923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 13603 - 13524
Alignment:
| Q |
99 |
tcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagctatcagtttgggacatct |
178 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||| |||||| ||||| |||| ||| |||||||| |
|
|
| T |
13603 |
tcactaacactgaattgtttcagagaattgagttggaacaaaccccactcctctcttgaagccatcaatttaggacatct |
13524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 9808 - 9762
Alignment:
| Q |
123 |
gaattgagttggaacaaaccccacttctctctcgaagctatcagttt |
169 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||||| |
|
|
| T |
9808 |
gaattgagttggaacaaaccccactcctctctcgaaccaatcagttt |
9762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 153 - 201
Alignment:
| Q |
119 |
cagagaattgagttggaacaaaccccacttctctctcgaagctatcagt |
167 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| | |||||| |
|
|
| T |
153 |
cagagaattgagttggaacaaactccactcctctctcgaaccaatcagt |
201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 6575426 - 6575331
Alignment:
| Q |
65 |
ctcctccggaaaggactctatgttttcaaagtcgtcactaacaatgaattctttcagagaattgagttggaacaaaccccacttctctctcgaagc |
160 |
Q |
| |
|
|||||| || || ||||| ||| ||| |||||| |||| ||||||||| | ||||| ||||| |||||||||||| |||| | |||||||||||| |
|
|
| T |
6575426 |
ctcctctgggaacgactccatggttttaaagtcatcacaaacaatgaaatatttcaaggaatttagttggaacaaatcccagtcctctctcgaagc |
6575331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2053
Description:
Target: scaffold2053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 301 - 255
Alignment:
| Q |
123 |
gaattgagttggaacaaaccccacttctctctcgaagctatcagttt |
169 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||| |||||||| |
|
|
| T |
301 |
gaattgagttggaacaaaccccactcctttcttgaagcaatcagttt |
255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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