View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_44 (Length: 247)
Name: NF16929_low_44
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 15456001 - 15456248
Alignment:
| Q |
2 |
atgatttgaacaaatccaatgagatataaaagtaaattgaatgtaaagtgatttatgtttaaatatattcatgtattaagaagaaattgtggttgttatt |
101 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15456001 |
atgatttgaagaaactcaatgagatataaaagtaaattgaatgtaaagtgatttatgtttaaatatattcatgtattaagaagaaattgtggttgttatt |
15456100 |
T |
|
| Q |
102 |
tagtggtgga--gccacg--------tatagacaggggaatgtcgcgacctctactatcatcatgcccttgtagtctcaacatgactcatttcgtgtgag |
191 |
Q |
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||||||| | | || | |||||||||||||| | | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15456101 |
tagtggtctatcgtcatgacctctgctatagacaggggaaggccatgacctctgctatcatcatgcccttgtagtctcaacatgactcatctcgtgtgag |
15456200 |
T |
|
| Q |
192 |
ttgtctatcgctttatagttgtttttggactccaaatctctacctttg |
239 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15456201 |
ttttctatcgctttatagttgtttttggactccaaatctctacctttg |
15456248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 5930858 - 5930825
Alignment:
| Q |
28 |
taaaagtaaattgaatgtaaagtgatttatgttt |
61 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
5930858 |
taaaagtaaattgaatgtaaagtgatttatgttt |
5930825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 5268349 - 5268301
Alignment:
| Q |
28 |
taaaagtaaattgaatgtaaagtgatttatgtttaaatatattcatgta |
76 |
Q |
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||||||| | |||||||||||||||||| ||||| |||||||||||||| |
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| T |
5268349 |
taaaagtgagttgaatgtaaagtgatttttgtttgaatatattcatgta |
5268301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 31844214 - 31844257
Alignment:
| Q |
27 |
ataaaagtaaattgaatgtaaagtgatttatgtttaaatatatt |
70 |
Q |
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|||||||||| ||||||||||||||||||||||| | ||||||| |
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| T |
31844214 |
ataaaagtaagttgaatgtaaagtgatttatgttcatatatatt |
31844257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 30913875 - 30913832
Alignment:
| Q |
29 |
aaaagtaaattgaatgtaaagtgatttatgtttaaatatattca |
72 |
Q |
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|||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
30913875 |
aaaagtaagttgaacgtaaaatgatttatgtttaaatatattca |
30913832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 32817411 - 32817445
Alignment:
| Q |
27 |
ataaaagtaaattgaatgtaaagtgatttatgttt |
61 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
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|
| T |
32817411 |
ataagagtaaattgaatgtaaagtgatttatgttt |
32817445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 22699801 - 22699768
Alignment:
| Q |
28 |
taaaagtaaattgaatgtaaagtgatttatgttt |
61 |
Q |
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|
||||||||| |||||||||||||||||||||||| |
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|
| T |
22699801 |
taaaagtaagttgaatgtaaagtgatttatgttt |
22699768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 22980729 - 22980762
Alignment:
| Q |
28 |
taaaagtaaattgaatgtaaagtgatttatgttt |
61 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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|
| T |
22980729 |
taaaagtaagttgaatgtaaagtgatttatgttt |
22980762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 22994316 - 22994349
Alignment:
| Q |
28 |
taaaagtaaattgaatgtaaagtgatttatgttt |
61 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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|
| T |
22994316 |
taaaagtaagttgaatgtaaagtgatttatgttt |
22994349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 33843841 - 33843793
Alignment:
| Q |
28 |
taaaagtaaattgaatgtaaagtgatttatgtttaaatatattcatgta |
76 |
Q |
| |
|
||||||| | ||| |||||||||||||||||||| ||||||||||||| |
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| T |
33843841 |
taaaagtgagttggatgtaaagtgatttatgtttggatatattcatgta |
33843793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 21105594 - 21105548
Alignment:
| Q |
27 |
ataaaagtaaattgaatgtaaagtgatttatgtttaaatatattcat |
73 |
Q |
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|||||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
21105594 |
ataaaagtgaattgaatgtaaaatgatttatgttgcaatatattcat |
21105548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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