View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_46 (Length: 239)
Name: NF16929_low_46
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_46 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 9865312 - 9865092
Alignment:
| Q |
19 |
ttactaatattcattgctggtggcattgcatactgcatcaccagagtgtactgaaacaaaggatccactgggagaatgtcgaagttcgctgcggctttca |
118 |
Q |
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| T |
9865312 |
ttactaatattcattgctggtggcattgcatactgcatcaccagagtgtactgaaacaaaggatccactgggagaatgccgaagttcgctgcggctttca |
9865213 |
T |
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| Q |
119 |
caataaacaatccaataacaggtagtacgaaaagccgagttataatgatgctgatcagtgtcaatggttttacacttgatgatttcaagcctgcagtgag |
218 |
Q |
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| T |
9865212 |
caataaacaatccaataacaggtagtacaaaaagccgagttataatgatgctgatcagtgtcaatggttttacacttgatgatttcaagcctgcagtgag |
9865113 |
T |
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| Q |
219 |
tttaccaccaagcaaaagggt |
239 |
Q |
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| T |
9865112 |
tttaccaccaagcaaaagggt |
9865092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 9907010 - 9907230
Alignment:
| Q |
19 |
ttactaatattcattgctggtggcattgcatactgcatcaccagagtgtactgaaacaaaggatccactgggagaatgtcgaagttcgctgcggctttca |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |
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| T |
9907010 |
ttactaatgttcattgctggtggcattgcatactgcatcaccaaagtgtactgaaacaaaggatccactgggagaatgccgaaactcgccacggctttca |
9907109 |
T |
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| Q |
119 |
caataaacaatccaataacaggtagtacgaaaagccgagttataatgatgctgatcagtgtcaatggttttacacttgatgatttcaagcctgcagtgag |
218 |
Q |
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| T |
9907110 |
caataaacaatccaataacaggtagtacgaaaagcctagttataatgatgctgatcagtgtcaatggttttacacttgatgatttcaaccctgcagtgag |
9907209 |
T |
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| Q |
219 |
tttaccaccaagcaaaagggt |
239 |
Q |
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| T |
9907210 |
gttaccacctagtaaaagggt |
9907230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 9896757 - 9896974
Alignment:
| Q |
19 |
ttactaatattcattgctggtggcattgcatactgcatcaccagagtgtactgaaacaaaggatccactgggagaatgtcgaagttcgctgcggctttca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | || | | || |||||||||| |
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| T |
9896757 |
ttactaatattcattgctggtggcattgcatactgcatcaccaatgtatactgaaacaaaggatccactgggagaaagccgtaactagccgcggctttca |
9896856 |
T |
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| Q |
119 |
caataaacaatccaataacaggtagtacgaaaagccgagttataatgatgctgatcagtgtcaatggttttacacttgatgatttcaagcctgcagtgag |
218 |
Q |
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||||||||||||||||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9896857 |
caataaacaatccaataacaggtagcaggaaaagccgggttatgatgatgcagatgagtgtcaatggttttacacttgatgatttcaagcctgccgtgag |
9896956 |
T |
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| Q |
219 |
tttaccaccaagcaaaag |
236 |
Q |
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| T |
9896957 |
gttaccaccaagcaaaag |
9896974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 9871124 - 9871341
Alignment:
| Q |
19 |
ttactaatattcattgctggtggcattgcatactgcatcaccagagtgtactgaaacaaaggatccactgggagaatgtcgaagttcgctgcggctttca |
118 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| | || | || || || ||||||| |
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| T |
9871124 |
ttactaatactcattgctggtggcattgcatactgcatcaccaatgtatattgaaacaaaggatccactgggagaaagccgtaattagccgcagctttca |
9871223 |
T |
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| Q |
119 |
caataaacaatccaataacaggtagtacgaaaagccgagttataatgatgctgatcagtgtcaatggttttacacttgatgatttcaagcctgcagtgag |
218 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9871224 |
caataaataatccaataacaggcagtacgaaaagccgagttatgatgatgcagatgagagtcaatggttttacacttgatgatttcaagcctgcagtgag |
9871323 |
T |
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| Q |
219 |
tttaccaccaagcaaaag |
236 |
Q |
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||||||||||||||||| |
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| T |
9871324 |
gttaccaccaagcaaaag |
9871341 |
T |
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