View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_47 (Length: 239)
Name: NF16929_low_47
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5610762 - 5610992
Alignment:
| Q |
1 |
tcaaattatatagttcgaatcaaacaaatacatgattttattatggttcacattacatcagcaatttttgtggtccatgacaaatataaaattttataaa |
100 |
Q |
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| T |
5610762 |
tcaaattatatagtttgaatcaaacaaatacatgattttattatggttcacattgcatcagcaatttttgtggtccatgacaaatataaaattttataaa |
5610861 |
T |
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| Q |
101 |
ttggtgtttggttcatttgtataccataccacaaaaccatgaacacttatccacattatatgaacgataagttagttgtagtttactacaaaataggtaa |
200 |
Q |
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| T |
5610862 |
ttggtgtttggttcatatgtataccataccacaaaaccatgaacacttatccaaattatatgaacgataagttagttgtagtttactacaacataggtaa |
5610961 |
T |
|
| Q |
201 |
acctagtctatttaggatccatgatgatgtc |
231 |
Q |
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| T |
5610962 |
acctagtctatttaggatccatgatgatgtc |
5610992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 41931537 - 41931493
Alignment:
| Q |
106 |
gtttggttcatttgtataccataccacaaaaccatgaacacttat |
150 |
Q |
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| T |
41931537 |
gtttggttcatttgcaaaccacacaacaaaaccatgaacacttat |
41931493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 12729525 - 12729574
Alignment:
| Q |
104 |
gtgtttggttcatttgtataccataccacaaaaccatgaacacttatcca |
153 |
Q |
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| T |
12729525 |
gtgtttggttcatttgcaaaccacatcacaaaaccatgaacacttatcca |
12729574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 13904177 - 13904109
Alignment:
| Q |
123 |
accataccacaaaaccatgaacacttatccacattatatgaacgataagttagttgtagtttactacaa |
191 |
Q |
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| T |
13904177 |
accacaccacataaccatgaacacttatctaatagatatgaacactaagttagttgtagtttagtacaa |
13904109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 16972811 - 16972762
Alignment:
| Q |
104 |
gtgtttggttcatttgtataccataccacaaaaccatgaacacttatcca |
153 |
Q |
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| T |
16972811 |
gtgtttggttcatttgcaaaccacaccacaaaactgtgaacacttatcca |
16972762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 25578132 - 25578083
Alignment:
| Q |
104 |
gtgtttggttcatttgtataccataccacaaaaccatgaacacttatcca |
153 |
Q |
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| T |
25578132 |
gtgtttggttcatttgcactccataccactaaaccatgaacatttatcca |
25578083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 25881332 - 25881419
Alignment:
| Q |
63 |
aatttttgtggtccatgacaaatataaaattttataaattg--gtgtttggttcatttgtataccataccacaaaaccatgaacactt |
148 |
Q |
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| T |
25881332 |
aatttatgtagtccacgacacacataaacttttataaattgacgtgtttggttcattagaaaatcacaccacagaaccatgaacactt |
25881419 |
T |
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