View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16929_low_54 (Length: 236)
Name: NF16929_low_54
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_54 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 13810791 - 13810597
Alignment:
| Q |
20 |
atattgagaaacatgaaacaagggaatcccattgtaagacaaaggcatacccaatcaaaaattgttcaaacctttaactctggtggttcaagcataagca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13810791 |
atattgagaaacatgaaacaagggaatcccattgtaagacaaaggcatacccaatcaaaa-ttgttcaaacctttaactctggtggttgaagcataagca |
13810693 |
T |
|
| Q |
120 |
tgcaccaattctttttgcaagtcttgtaaagctactattagtcggctttggtgaaggttgcatgtccacttcaggtggcggacgcacgtttacttc |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13810692 |
tgcacctattctttttgcaagtcttgtaaagctactattattcggctttggtgaaggttgcatgtccacttcaggtggcggacgcacgtttacttc |
13810597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 3322333 - 3322462
Alignment:
| Q |
28 |
aaacatgaaacaagggaatcccattgtaagacaaaggcatacccaatcaaaaattgttcaaacctttaactc--tggtggttcaagcataagcatgcacc |
125 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||| ||| || |||||||||||||| |||| ||| |
|
|
| T |
3322333 |
aaacattaaagaagggaatcccattgtatgacaaaggcatgtccagtcaaacattgttcaaacctttatctctatgctggttcaagcataaacatgtacc |
3322432 |
T |
|
| Q |
126 |
aattctttttgcaagtcttgtaaagctact |
155 |
Q |
| |
|
||||||||||||| || ||||||| |||| |
|
|
| T |
3322433 |
cattctttttgcaaatcctgtaaagatact |
3322462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 3259349 - 3259435
Alignment:
| Q |
72 |
aatcaaaaattgttcaaacctttaactct--ggtggttcaagcataagcatgca-ccaattctttttgcaagtcttgtaaagctact |
155 |
Q |
| |
|
||||||| ||||||||||||||| |||| | |||||||||||||| |||||| ||| || ||||||||| |||||||||| |||| |
|
|
| T |
3259349 |
aatcaaatgttgttcaaacctttatctctatgctggttcaagcataaacatgcacccatttttttttgcaaatcttgtaaagatact |
3259435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 32409522 - 32409592
Alignment:
| Q |
72 |
aatcaaaaattgttcaaacctttaactc--tggtggttcaagcataagcatgcaccaattctttttgcaag |
140 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || ||||||||||| || ||||| | ||||||||||||||| |
|
|
| T |
32409522 |
aatcaaaaattgttcaaatctttatctccatgttggttcaagcacaaacatgccctaattctttttgcaag |
32409592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University