View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16929_low_61 (Length: 205)
Name: NF16929_low_61
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 26554257 - 26554432
Alignment:
| Q |
16 |
aaaattcatgtttttaattcaactaaacataatacatgtttctttgcttttgctatatatagatggccgaagaagagccaccacagtcgtccccgtcacc |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
26554257 |
aaaatacatgtttttaattcaactaaacataatacatgtttctttgcgtttgctatatatagatggccgaagaagagccaccacagccgtccctgtcacc |
26554356 |
T |
|
| Q |
116 |
accacagccactaaggccacatggaagaggacct-aaatccca------attcatcatttgttccgatgccacaga |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26554357 |
accacagccactaaggccacatggaagaggacctgaaatcccaaccatcattcatcatttgttccgatgccacaga |
26554432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University