View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_7 (Length: 556)
Name: NF16929_low_7
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 41967988 - 41968424
Alignment:
| Q |
1 |
aattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacacaagcat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41967988 |
aattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcat |
41968087 |
T |
|
| Q |
101 |
ttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacattctacaatttcaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41968088 |
ttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttcaacca |
41968187 |
T |
|
| Q |
201 |
tgcaatattagttagtacatcattttagtgaatgaatgttgtaacatcaaattttaacaataaataaaaagtaaagaaaga---nnnnnnnnatagattt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41968188 |
tgcaatattagttagtacatcattttagtgaatgaatgttgtaacatcaaattttaacaataaataaaaagtaaagaaagattttttttattatagattt |
41968287 |
T |
|
| Q |
298 |
tatatcaacaatatcttttgtaaaatttatt--tgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatc |
395 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968288 |
tatatcaacaatatcttttgtaaaatttatttatgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatc |
41968387 |
T |
|
| Q |
396 |
ctgaaactcaattaaacaaaaatgaaattaacatgag |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
41968388 |
ctgaaactcaattaaacaaaaatgaaattaacatgag |
41968424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 496 - 537
Target Start/End: Original strand, 41968488 - 41968529
Alignment:
| Q |
496 |
gttataagccttaccgttgggtcaggagtcactggagctggt |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
41968488 |
gttataagccttaccgttgggtcaggagtcactggagctggt |
41968529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 1234996 - 1235278
Alignment:
| Q |
1 |
aattcaaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacacaagcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1234996 |
aattcaaggacattttggtcctccttctttagtcttccagtcgttatagcacggacaaacttccttgtttccataagttcctggaggtacacacaagcat |
1235095 |
T |
|
| Q |
101 |
ttggcacaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctatcttcacattgaggagcacattctacaatttcaacca |
200 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1235096 |
tttgcacaacaatacttgcaatagaacaaacatggttttctgtgatgtgtttttgagcatctatcttcacatcgaggagcacattctacaatttcaacca |
1235195 |
T |
|
| Q |
201 |
tgcaatattagttagtacatcattttagtg-------aatgaatgttgtaacatcaaattttaacaataaataaaaagtaaaga |
277 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
1235196 |
tgcaatattaattag-acataattttagtgaataatcaatgaatgttgtaacatcaaattttaacaataaacaaaaaataaaga |
1235278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 310 - 432
Target Start/End: Original strand, 1235334 - 1235462
Alignment:
| Q |
310 |
atcttttgtaaaatttattt--gagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatcctgaaactcaat |
407 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1235334 |
atcttttgtaaaatttatttatgagtgaagctatatccttcattaaatcaataccttctggtttaagacttccttcagtggtgccatcctgaaactcaat |
1235433 |
T |
|
| Q |
408 |
t----aaacaaaaatgaaattaacatgag |
432 |
Q |
| |
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| |||||||||||||||||||||||| |
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|
| T |
1235434 |
taaacaaacaaaaatgaaattaacatgag |
1235462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 499 - 537
Target Start/End: Original strand, 1235529 - 1235567
Alignment:
| Q |
499 |
ataagccttaccgttgggtcaggagtcactggagctggt |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1235529 |
ataagccttaccgttgggtcaggagtcactggagctggt |
1235567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 35649515 - 35649673
Alignment:
| Q |
6 |
aaggacattttggtcctccttctttggtcttccaatcgttatagcacggacaaacttccttgtttccataagttcccggaggtacacacaagcatttggc |
105 |
Q |
| |
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|||| ||||| |||||||| |||||||||||| | ||| ||||| || ||||| | |||||| |||||| || ||||| |||||||| || ||||| |
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| T |
35649515 |
aagggcatttgggtcctccccttttggtcttccagttgttgtagcaagggcaaacctgcttgttgccataatagccaggaggcacacacaaacacttggc |
35649614 |
T |
|
| Q |
106 |
acaacaatacttgcaatagaacaaacatggttttttgtgatgtgtttttgagcatctat |
164 |
Q |
| |
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|||||| | |||||| |||| || ||||| || |||| ||||| ||||||||||||| |
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|
| T |
35649615 |
acaacacttgttgcaaaagaataagcatggcttcttgtattgtgtgtttgagcatctat |
35649673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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