View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_8 (Length: 526)
Name: NF16929_low_8
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 16512864 - 16513157
Alignment:
| Q |
15 |
tatgctaacttgtaactagtgtaaatttgatcattgttgagttttttaagtcctttactccacagttctgtttgttacttattttaatttgcttctgtat |
114 |
Q |
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| T |
16512864 |
tatgctaatttgtaactagtctaaatttgatcattgttta----tttaagacctttatttcacagttctgattgttactttttttaatttgcttctatat |
16512959 |
T |
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| Q |
115 |
aggtggactaagttggttcaaaagccctatgagcagggtgatcaaagagccctgaaattggtcaagggaattttgaggacattgatgttaaggagaacca |
214 |
Q |
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| T |
16512960 |
aggtggactaagttggttcaaaagccctatgagcagggtgatcaaagagccctaaaattggtcaagggaattttgaggacattgatgttaaggagaacta |
16513059 |
T |
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| Q |
215 |
aggaaacaaaggataaagaaggaaggtagtcattctcacttcatgtgcactgtgtccctttcaatatgcatgtctgaatttatttataatgatatata |
312 |
Q |
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| T |
16513060 |
aggaaacaaaggataaagaaggaaggtagtcattctcacttcatgtgcactgtgtctctttcaatatgcatgcctgaatttatttataatgatatata |
16513157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 434 - 509
Target Start/End: Original strand, 16513250 - 16513325
Alignment:
| Q |
434 |
aggcctatacttgtcctaccaccaactgatattcaattgattgagtgtgaacagtcagaatctgaacgggacttct |
509 |
Q |
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| T |
16513250 |
aggcctatacttgtcctgccaccaactgatattcaattgattgagtgtgagcagtcagaatctgaacgggacttct |
16513325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 434 - 509
Target Start/End: Complemental strand, 35533006 - 35532931
Alignment:
| Q |
434 |
aggcctatacttgtcctaccaccaactgatattcaattgattgagtgtgaacagtcagaatctgaacgggacttct |
509 |
Q |
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| T |
35533006 |
aggcctatacttgtcctgccaccaattgatattcaaatgtttgagtgagaacagtcagaatttgaacgagacttct |
35532931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 19933787 - 19933824
Alignment:
| Q |
432 |
gcaggcctatacttgtcctaccaccaactgatattcaa |
469 |
Q |
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| T |
19933787 |
gcaggcctatacttgtcctgccaccaactgatattcaa |
19933824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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