View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16929_low_9 (Length: 489)
Name: NF16929_low_9
Description: NF16929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16929_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 36982979 - 36982527
Alignment:
| Q |
1 |
aataagtaagatagaactagtagcgagttatgtacgtagcatgaactcttcagattgaagatgtgtcatgtgtctgacatcgacatgaatctgacacatg |
100 |
Q |
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| T |
36982979 |
aataagtaagatagaactagtagcgagttatgta----gcatgcactcttcagattgaagatgtgtcgtgtgtctgacatcgacatgaatctgacacatg |
36982884 |
T |
|
| Q |
101 |
tatttatttcatcagttctattttctaaaattaggac-tgatgtctatgtgctagtgtcggtctcagtgttccatagagacagtgtctatgatgaactcg |
199 |
Q |
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| T |
36982883 |
tatttatttcatcagttctattttctaaaattaggacatgatgtctatgtgctagtgtcg---------------agagacagtgtctatgatgaactcg |
36982799 |
T |
|
| Q |
200 |
aattactgaaagggacacctttcatatacttattcatatgatgaactcaattacgtaagtgtttctaatttttgaaagaacttgtttgttaagaacaaac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36982798 |
aattactgaaagggacacctttcatatacttattcatatgatgaactcaattacgtaagtgtttctaatttttgaaagaacttgtttgtgaagaacaaac |
36982699 |
T |
|
| Q |
300 |
atacctttatccacagaacatcacaacaaagtttgcacctgagcatgtttctaaaccagctgcatcatcatgagcaaagctatatgctgcaggacaaact |
399 |
Q |
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| T |
36982698 |
atacctttatccacagaacatcacaacaaag-ttgcacctgagcatgtttctaaaccagctgcatcatcatgagcaaagctatatgctgcaggacaaact |
36982600 |
T |
|
| Q |
400 |
tgtttaaaaatgttagagtagtttgaaggcaaacatgtagcagggttttcataactccctctacaacaatact |
472 |
Q |
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| T |
36982599 |
tgtttaaaaatgttagagtagtttgaaggcaaacaggtagcagggttttcataactccctctacaacaatact |
36982527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 395
Target Start/End: Complemental strand, 36963794 - 36963655
Alignment:
| Q |
258 |
gtgtttctaatttttgaaagaacttgtttgttaagaac--aaacatacctttatccacagaacatcacaacaaagtttgcacctgagcatgtttctaaac |
355 |
Q |
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||||||| |||||||||||||| |||||||| ||||| ||| | ||||| |||| |||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
36963794 |
gtgtttccaatttttgaaagaaattgtttgtaaagaaagaaaaaaaaccttgatccccagaacatgacaacaaagtttgcacctaagcatgtttctaaac |
36963695 |
T |
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| Q |
356 |
cagctgcatcatcatgagcaaagctatatgctgcaggaca |
395 |
Q |
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| | ||||||||| || ||||| ||| ||| || |||||| |
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| T |
36963694 |
ctgatgcatcatcgtgggcaaaactacatgttgtaggaca |
36963655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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