View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1692_high_1 (Length: 670)

Name: NF1692_high_1
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1692_high_1
NF1692_high_1
[»] chr5 (4 HSPs)
chr5 (6-647)||(40516664-40517305)
chr5 (117-165)||(42910475-42910523)
chr5 (123-182)||(5173786-5173845)
chr5 (122-163)||(8825465-8825506)
[»] chr7 (4 HSPs)
chr7 (312-380)||(39900868-39900936)
chr7 (99-167)||(39887629-39887697)
chr7 (118-163)||(36729584-36729629)
chr7 (117-163)||(47430762-47430808)
[»] chr1 (3 HSPs)
chr1 (123-190)||(43049436-43049503)
chr1 (104-163)||(38577926-38577986)
chr1 (123-165)||(13697233-13697275)
[»] scaffold0020 (1 HSPs)
scaffold0020 (117-154)||(172529-172566)
[»] chr3 (3 HSPs)
chr3 (99-163)||(4030229-4030293)
chr3 (404-448)||(44713-44757)
chr3 (404-448)||(13582390-13582434)
[»] chr8 (2 HSPs)
chr8 (116-163)||(3631174-3631221)
chr8 (117-150)||(28431397-28431430)
[»] chr4 (3 HSPs)
chr4 (105-163)||(30746107-30746165)
chr4 (117-164)||(32028235-32028282)
chr4 (122-155)||(36114915-36114948)
[»] chr2 (3 HSPs)
chr2 (123-163)||(16244926-16244966)
chr2 (116-164)||(36322714-36322762)
chr2 (116-159)||(9436122-9436165)


Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 6 - 647
Target Start/End: Original strand, 40516664 - 40517305
Alignment:
Q  6 catcatcatatgtctcttgagctcaggactttcactcatcaaaattattgtgcaacaagcaagtcactcatcaaaactattgtgcaatatgtgtgtcgga 105  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||    
T  40516664 catcatcatatgtctcttgagctgaggactttcactcatcaaaattattgtgcaacaagcaattcactcatcaaaattattgttcaacatgtgtgtcaga 40516763  T
Q  106 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacacgcacattgataccaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  40516764 atcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctataaaatcatagtaggttgtcgtgattcaaacacacgcacagtgataccaa 40516863  T
Q  206 atatatatttaatgctctgtaagtagatagattttcactactctatttgattgaattaaaacagtaagtttgaggtttataacgaaacatttgagcatag 305  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40516864 atatatacttaatgctctgcaagtagatagattttcactactctatttgattgaattaaaacagtaaatttgaggtttataacgaaacatttgagcatag 40516963  T
Q  306 tactgctcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 405  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40516964 tactggtcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacataataaacaatatataaactgcacaa 40517063  T
Q  406 ggcaagcgggtaataaactgcgccgccaggcctttttggatggtatagtacttgcattcgggttatccaaatctcaacaattccaactaatgatactcaa 505  Q
    ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40517064 ggcaagcaggtaataaactgcgccgtcaggcctttttggatggcatagtacttgcattcgggttatccaaatctcaacaattccaactaatgatactcaa 40517163  T
Q  506 tactcttggcagaagaccgggaaacaatgacttgccaataaaaaatgctgaaactgtaggcttgagcttacatttgcagtgttattttttcccacttgca 605  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  40517164 tactcttggcagaagaccgggaaacaatgacttgcgcataaaaaatgctgaaactgtgggcatgagcttacatttgcagtgttattttttcccacttgca 40517263  T
Q  606 tggctacacattaattgtcattccgatcctaatcttcctctc 647  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40517264 tggctacacattaattgtcattccgatcctaatcttcctctc 40517305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 42910523 - 42910475
Alignment:
Q  117 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcaca 165  Q
    ||||| |||||||||||||||| |||||||||||||||  |||||||||    
T  42910523 ccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcaca 42910475  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 5173845 - 5173786
Alignment:
Q  123 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattc 182  Q
    |||||||| |||| ||||| |||||||||||||||||||||| |||| |  |||||||||    
T  5173845 tgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattc 5173786  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 8825465 - 8825506
Alignment:
Q  122 atgatttttcaaaagctacactttgtagcttctgtaaaatca 163  Q
    ||||||||| |||||||||| |||||| ||||||||||||||    
T  8825465 atgattttttaaaagctacattttgtaacttctgtaaaatca 8825506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 39900936 - 39900868
Alignment:
Q  312 tcccatgcatgatactctacattgcatcatccacattttcatcacgtaatgatggttaagactccacat 380  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  39900936 tcccatgcatgatactctacattgcattattcacattttcatcacgtaatgatggttaagactccacat 39900868  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 39887629 - 39887697
Alignment:
Q  99 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcacagt 167  Q
    |||| |||||| || | |||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  39887629 tgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagt 39887697  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 36729584 - 36729629
Alignment:
Q  118 caccatgatttttcaaaagctacactttgtagcttctgtaaaatca 163  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||    
T  36729584 caccatgattttgcaaaagctacactttgtaggttttgtaaaatca 36729629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 47430808 - 47430762
Alignment:
Q  117 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 163  Q
    |||| ||||||||| ||||||||||||| |||||||||| |||||||    
T  47430808 ccacaatgatttttaaaaagctacacttggtagcttctgcaaaatca 47430762  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 43049436 - 43049503
Alignment:
Q  123 tgatttttcaaaagctacactttgtagcttctgtaaaatcacagtaggttgccgtgattcaaacacac 190  Q
    |||||||| |||||||||||||||||||||||| |||||||  || ||| |||||||||||| |||||    
T  43049436 tgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattcaagcacac 43049503  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 38577986 - 38577926
Alignment:
Q  104 gaatcaaggtggcccaccatgatttttcaaaagctacactttgtagc-ttctgtaaaatca 163  Q
    |||||| | ||| ||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  38577986 gaatcacgttggtccaccttgattttccaaaagctacactttgtagctttctgtaaaatca 38577926  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 13697233 - 13697275
Alignment:
Q  123 tgatttttcaaaagctacactttgtagcttctgtaaaatcaca 165  Q
    ||||||||||||||||||||| ||||||||| | |||||||||    
T  13697233 tgatttttcaaaagctacactgtgtagcttcagcaaaatcaca 13697275  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 172529 - 172566
Alignment:
Q  117 ccaccatgatttttcaaaagctacactttgtagcttct 154  Q
    ||||||||||||||||||||||||||||||||||||||    
T  172529 ccaccatgatttttcaaaagctacactttgtagcttct 172566  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 4030293 - 4030229
Alignment:
Q  99 tgtcggaatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 163  Q
    |||| |||||| ||||| ||||  | ||||||||||||||||||||||||||||||| |||||||    
T  4030293 tgtcagaatcacggtggtccactgtaatttttcaaaagctacactttgtagcttctgcaaaatca 4030229  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 448
Target Start/End: Original strand, 44713 - 44757
Alignment:
Q  404 aaggcaagcgggtaataaactgcgccgccaggcctttttggatgg 448  Q
    |||||||||||| || |||||||||||| || |||||||||||||    
T  44713 aaggcaagcgggcaacaaactgcgccgctagacctttttggatgg 44757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 404 - 448
Target Start/End: Original strand, 13582390 - 13582434
Alignment:
Q  404 aaggcaagcgggtaataaactgcgccgccaggcctttttggatgg 448  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||||||    
T  13582390 aaggcaagcgggcaataaacagcgtcgctaggcctttttggatgg 13582434  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 3631174 - 3631221
Alignment:
Q  116 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 163  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  3631174 cccatcatgatttttcaaaagatacactttgtaacttctgtaaaatca 3631221  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 28431397 - 28431430
Alignment:
Q  117 ccaccatgatttttcaaaagctacactttgtagc 150  Q
    ||||||||||||||||||||||||||||| ||||    
T  28431397 ccaccatgatttttcaaaagctacactttatagc 28431430  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 30746165 - 30746107
Alignment:
Q  105 aatcaaggtggcccaccatgatttttcaaaagctacactttgtagcttctgtaaaatca 163  Q
    ||||||| || |||||||||||||||||||| | ||||||||||| ||||| |||||||    
T  30746165 aatcaagatgacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca 30746107  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 32028235 - 32028282
Alignment:
Q  117 ccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 164  Q
    |||| |||||||||||||||||||||||| |||||| || ||||||||    
T  32028235 ccactatgatttttcaaaagctacactttatagcttatgcaaaatcac 32028282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 36114915 - 36114948
Alignment:
Q  122 atgatttttcaaaagctacactttgtagcttctg 155  Q
    |||||||||||||||||||||||| |||||||||    
T  36114915 atgatttttcaaaagctacactttatagcttctg 36114948  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 16244966 - 16244926
Alignment:
Q  123 tgatttttcaaaagctacactttgtagcttctgtaaaatca 163  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  16244966 tgattttccaaaagctacactctgtagcttctgtaaaatca 16244926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 36322714 - 36322762
Alignment:
Q  116 cccaccatgatttttcaaaagctacactttgtagcttctgtaaaatcac 164  Q
    |||||| ||||||||||||| ||||||||||||||||||  ||||||||    
T  36322714 cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcac 36322762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 9436165 - 9436122
Alignment:
Q  116 cccaccatgatttttcaaaagctacactttgtagcttctgtaaa 159  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||    
T  9436165 cccactatgatttttcaaaaactacactttgtagtttctgtaaa 9436122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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