View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_11 (Length: 389)
Name: NF1692_high_11
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 4625427 - 4625055
Alignment:
| Q |
1 |
acttattccatcaattttctttatacctattattattaatcatcaatcccctatttatgcacaatccaaaacccttgatcttaagattatgagtcaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4625427 |
acttattccatcaattttctttatacctattattattgatcatcaatcccctatttatgcgcaatccaaaacccttgatcttaagattatgagtcaaatg |
4625328 |
T |
|
| Q |
101 |
tccatttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacattactcccccattaaaatcaacctcgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4625327 |
tccatttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacattactcccccattaaaatcaacctcgtc |
4625228 |
T |
|
| Q |
201 |
ctaaggttgaagtcaaggtaatggtgtaaactgatagcagcaacattccacataactctcatagtcaagtgggccttccacataaacaagagaagattca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4625227 |
ctaaggttgaagtcaaggtaatggtgtaaactgatagcagcaactttccacataactctcatagtcaagtgggccttccacataaacaagagaagattca |
4625128 |
T |
|
| Q |
301 |
ccacctagatcccactctttgaattcaacctgttggaaaattggaagctcacaaataaaaggattggattctt |
373 |
Q |
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| T |
4625127 |
ccacctagatcccactctttgaattcaacttgttggaaaattggaagctcacaaataaaaggattggattctt |
4625055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 32848035 - 32848152
Alignment:
| Q |
9 |
catcaattttctttatacctattattattaatcatcaatcccctatttatgcacaatccaaaac-ccttgatcttaagattatgagtcaaatgtccattt |
107 |
Q |
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||||||||||||| ||||| |||||| ||||||| | | |||||||||||||||||||| ||||||| ||| ||| ||||| || |||| ||||| |
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| T |
32848035 |
catcaattttcttgatacccattattg---atcatcatttctctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcattt |
32848131 |
T |
|
| Q |
108 |
acctcaaccaattatgttatg |
128 |
Q |
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|||||||||||| |||||||| |
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| T |
32848132 |
acctcaaccaatgatgttatg |
32848152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 15027066 - 15027160
Alignment:
| Q |
103 |
catttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacattactcccccattaaaatcaacctcgtcct |
202 |
Q |
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| T |
15027066 |
catttacctcaaccaattatgttatgc-----caaatgtattttctcatgtgttattttggatcataacattactcccccattcaaatcaaccttgtcct |
15027160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 34272400 - 34272283
Alignment:
| Q |
9 |
catcaattttctttatacctattattattaatcatcaatcccctatttatgcacaatccaaa-acccttgatcttaagattatgagtcaaatgtccattt |
107 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||||| || ||||||||||||||| || | ||||||| ||| ||| | ||||| |||||||||| |
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| T |
34272400 |
catcaattttcttcatacccattattatttatcatttttc---tatttatgcacaatctaagcatccttgattttaggatcactagtcacatgtccattt |
34272304 |
T |
|
| Q |
108 |
acctcaaccaattatgttatg |
128 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
34272303 |
acctaaaccaattatgttatg |
34272283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 39773239 - 39773169
Alignment:
| Q |
98 |
atgtccatttacctcaaccaattatgttatgttatgtcaaatataattccttatatgtcattttgaataataacat |
173 |
Q |
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|||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |
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| T |
39773239 |
atgtccatttttctcaaccaattatgttatgccatgtg-----taattccttatatgtcattttgaatcataacat |
39773169 |
T |
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