View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_13 (Length: 353)
Name: NF1692_high_13
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 44280675 - 44281010
Alignment:
| Q |
1 |
caaaatatttaaattagaaaagtcacggcccataatagtaggtcagatagaacaaccaatctaatatacaaaaactatgaatttgaggcaaagctaaatg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44280675 |
caaaatatttaaattagaaaagtcaaggcccataatagtaggtcagatagaacaaccaatctaatatacaaaaactatgaatttgaggcaaagctaaatg |
44280774 |
T |
|
| Q |
101 |
acaattaaaaatgtgtcaaagtgaaggagagtatagttttcttcctgacatgtcaaaaatatcctcactacttatactataccgcagttttattaaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44280775 |
acaattaaaaatgtgtcaaagtgaaggagagtatagttttcttcctgacatgtcaaaaatatcctcactacttatactataccgtagttttattaaattc |
44280874 |
T |
|
| Q |
201 |
cgtgttcatcttattatg-tgtccacattcaactgaatttgcaaaccaagaaaagtcaagcacagaaataaaatacacttaaaaattgatgcaagcaatc |
299 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44280875 |
cgtgttcatcttattatgttgtccacattcaactgaatttgtcaaccaagaaaagtcaagcacagaaataaaatacacttaaaaattgatgcaagcaatc |
44280974 |
T |
|
| Q |
300 |
catcactctataatcttatatagtaatgcatgctat |
335 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
44280975 |
catcactctataatcttatatagtaatgcatgctat |
44281010 |
T |
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