View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_16 (Length: 289)
Name: NF1692_high_16
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 14259981 - 14260240
Alignment:
| Q |
16 |
caagaatatatcctagataaatctctcaaaggcacaactctataatccgaacgtctaatactacattaataggtagagtttagagg----aattcatgat |
111 |
Q |
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| T |
14259981 |
caagaatatatcctagataaatctctcaaaggcacaactctataatccgaacgtctaatactacattaataggtagagtttagagggattaattcatgat |
14260080 |
T |
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| Q |
112 |
cagcttccactagaaccaaataatgtttggtaatttatgtgtgatagtgatgtgaacttatacaaagaaaagagaactcatggtaatatttcatcataat |
211 |
Q |
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| T |
14260081 |
caacttccactagaaccaaataatgtttggtaatttatgtgtgatagtgatgtgaacttatacaaagaaaagagaactcatggtaatatttcatcataat |
14260180 |
T |
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| Q |
212 |
ctgatgataacaattcatgtcttaaccaattccttttgcatattttatacattgtcccta |
271 |
Q |
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| T |
14260181 |
ttgatgataacaattcatgtcttaaccaattccttttgcatattttatacattatcccta |
14260240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 12274232 - 12274399
Alignment:
| Q |
16 |
caagaatatatcctagataaatc-tctcaaaggcacaactctataatccgaacgtctaatactacattaataggtagagtttagaggaattcatgatcag |
114 |
Q |
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| T |
12274232 |
caagaatatattatagataaatcctctcaaag-cacaactctagaatttgaaagtctaaaactacatttataggtagactttattgggat-cacgatcaa |
12274329 |
T |
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| Q |
115 |
cttccactagaaccaaataatgtttggtaatttatgtgtgatagtgatgtgaacttatacaaagaaaaga |
184 |
Q |
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| T |
12274330 |
ctttcactagaaccaaaaattatttggtaatttatgtgtgatagtgatgtgaaattatacaaagaaaaga |
12274399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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