View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_20 (Length: 263)
Name: NF1692_high_20
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 24617567 - 24617336
Alignment:
| Q |
18 |
gtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24617567 |
gtatgcaggcatgcagatggatacattgttttcaggtaatgtcatactgtgaattttccccttaattgtgtttaagccaatatatatgaccttaaaactg |
24617468 |
T |
|
| Q |
118 |
tcctaatgttgcttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgttcctaaatatatcacctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24617467 |
tcctaatgttgcttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgttcctaaatatatcacctt |
24617368 |
T |
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| Q |
218 |
ggtaaaaacaatctttaagctctttacagatc |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24617367 |
ggtaaaaacaatctttaagctctttacagatc |
24617336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 24106152 - 24106333
Alignment:
| Q |
18 |
gtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaacta |
117 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24106152 |
gtatgcaggcatgcagatggatactttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactg |
24106251 |
T |
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| Q |
118 |
tcctaatgttgcttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgt |
199 |
Q |
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| T |
24106252 |
tcctaatgttgcttggttttatactctaattcaatatagtacagtaataaatggaaatggagcaatcaacttgcttcactgt |
24106333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 24113498 - 24113679
Alignment:
| Q |
18 |
gtatgcaggcatgcagatggatacattgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaacta |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24113498 |
gtatgcaggcatgcagatggatactttgttttcaggtaatttcatactgtgaattttcccctttattgtgtttaagccaatatatatgaccttaaaactg |
24113597 |
T |
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| Q |
118 |
tcctaatgttgcttggttttatactctaattcaatacagtgcagtaaaaagtggaaatagagcaatcaacttgcttcactgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||| ||||||||||||||||||||||| |
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| T |
24113598 |
tcctaatgttgcttggttttatactctaattcaatatagtacagtaataaatggaaatggagcaatcaacttgcttcactgt |
24113679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 24101934 - 24101984
Alignment:
| Q |
113 |
aactatcctaatgttgcttggttttatactctaattcaatacagtgcagta |
163 |
Q |
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|||| ||||||||||||||||||| ||||||||||||| || ||| ||||| |
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| T |
24101934 |
aactgtcctaatgttgcttggtttcatactctaattcactatagtacagta |
24101984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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