View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_21 (Length: 249)
Name: NF1692_high_21
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 11708175 - 11707929
Alignment:
| Q |
1 |
caattggtactaagtgtaagtgatagaaacgtggttatcaagaagtactcttttgaagttatttaacttttagaggtaaaaatcagtatgaatacaagtg |
100 |
Q |
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| T |
11708175 |
caattggtactaagtgtaagtgatagaaacgtggttatcaagaagtactcttt-gaagttatttaacttttagaggtaaaaatcagtatgaatacaagtg |
11708077 |
T |
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| Q |
101 |
aatgtatgagaaaaagaataaaaggttaaaactatgtgggcttcacctgtttctcttttttggtcttgaaagtaacatgtcaaagt-ttttatgatatga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11708076 |
aatgtatgagaaaaagaataaaaggttaaaactatgtgggcttcacctgtttctcttttttggtcttgaaagtaacatgtcaaagttttttatgatatga |
11707977 |
T |
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| Q |
200 |
ttaaagtatgtttcaggtctttgttacctgtaccatattattggacat |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11707976 |
ttaaagtatgtttcaggtctttgttacctgtaccatatttttggacat |
11707929 |
T |
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