View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_28 (Length: 221)
Name: NF1692_high_28
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1590675 - 1590479
Alignment:
| Q |
1 |
aattaatcatgtcttctttagcaacatgtttgttcatgagagaacaagcatcctaaacttccaccctttgatgatgaagttctatgcatattttagcaag |
100 |
Q |
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| T |
1590675 |
aattaatcatgtcttctttagcaacatgtttgttcatgagagaacaagcatcctaaacttccaccctttgatgatgaaattctatgcatattttagcaag |
1590576 |
T |
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| Q |
101 |
tatacttattatatgacgatggaatcttttcaccagcgctgccttgctttataacatctccatgttaaataaaaagtctcaacctttaaggttattt |
197 |
Q |
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| T |
1590575 |
tatacttattatatgacgatggaatcttttcaccagcgctgccttgctttataacatcttcacgttaaataaaaagtctcaacctttaaggttattt |
1590479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20585270 - 20585206
Alignment:
| Q |
1 |
aattaatcatgtcttctttagcaacatgtttgttcatgag--agaacaagcatcctaaacttcca |
63 |
Q |
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| T |
20585270 |
aattaatcatgtcatctttacgaacatgtttgttcatcagcaagaacaagcatcctaatcttcca |
20585206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 55541792 - 55541710
Alignment:
| Q |
5 |
aatcatgtcttctttagcaacatgtttgttcatga--gagaacaagcatcctaaacttccaccctttgatgatgaagttctatg |
86 |
Q |
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| T |
55541792 |
aatcatgttttctttaccaacatgtttgttgatcaacaagaacaagcatcctaatctttca-cctttgttgatcaagttctatg |
55541710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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