View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_4 (Length: 469)
Name: NF1692_high_4
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 236 - 453
Target Start/End: Original strand, 11649388 - 11649605
Alignment:
| Q |
236 |
gctataaccttgcatagagtattgtcactaatccagaaatcaagagatcatggcagagagtgcagttagttttcttctgcaaaggcttgtgcctgtattt |
335 |
Q |
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| T |
11649388 |
gctataaccttgcatagagtattgtcactaatccagaaatcaagagatcatggcagagagtgcagttagttttcttctgcaaaggcttgtgcctgtattt |
11649487 |
T |
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| Q |
336 |
gagaataagatgaatttgctcgctggcgttgaagacgaagtggtgtatctgaaaggacagttggaactcataggagccttcttaaaggttgcagatgcat |
435 |
Q |
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| T |
11649488 |
gagaataagatgaatttgctcgctggcgttgaagacgaagtggtgtatctgaaaggacagttggaactcataggagccttcttaaaggttgcagatgcat |
11649587 |
T |
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| Q |
436 |
tagaagagagtgatgagg |
453 |
Q |
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| T |
11649588 |
tagaagagagtgatgagg |
11649605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 11649166 - 11649368
Alignment:
| Q |
53 |
tcatttgaagcatatgtaaaataactttgctatagaatatactaattaaatcctttattttaaggctatgaaaaactataaagcaaaccacttcatatag |
152 |
Q |
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| T |
11649166 |
tcatttgaagcatatgtaaaataactttgctatagaatatcctaattaaatcctttattttaaggctatgaaaaactataaagcaaaccacttcatatag |
11649265 |
T |
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| Q |
153 |
ctaataagtccccctctcagnnnnnnnnctaacaagtctaaaatctggttagcatatcatagtgggtctaagctaactaatctgctataaccttgcatag |
252 |
Q |
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| T |
11649266 |
ctaataagtccccctctcagaaaaaaaactaacaagtctaaaatctggttagcatatcatagtgtgtctaagctaactaatctgctataaccttgcatag |
11649365 |
T |
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| Q |
253 |
agt |
255 |
Q |
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||| |
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| T |
11649366 |
agt |
11649368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 453
Target Start/End: Original strand, 11627513 - 11627685
Alignment:
| Q |
278 |
agagatcatggcagagagtgcagttagttttcttctgcaaaggcttgtgcctgtatttgagaataagatgaatttgctcgctggcgttgaagacgaagtg |
377 |
Q |
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|||||||||||||||| || || | ||||||||||||||||||||| |||||||| |||||| || ||||||||||| | || ||||||| |||||| |
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| T |
11627513 |
agagatcatggcagag---gctgtgaattttcttctgcaaaggcttgtacctgtattcgagaatgaggtgaatttgctcacaggggttgaagcagaagtg |
11627609 |
T |
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| Q |
378 |
gtgtatctgaaaggacagttggaactcataggagccttcttaaaggttgcagatgcattagaagagagtgatgagg |
453 |
Q |
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| T |
11627610 |
gtgtatctgaaagaaaaattggagctcataaaagctttcttaaaggttgctgatgcgttagaagaaagtgacgagg |
11627685 |
T |
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