View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_high_8 (Length: 447)
Name: NF1692_high_8
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 33276894 - 33276471
Alignment:
| Q |
8 |
caagaatatcatcaacaacctgaaacaataaaccaatataactcgcgaattttcgcagtttttcaacatcttcatcacttccaccacctaatattgcacc |
107 |
Q |
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| T |
33276894 |
caagaatatcatcaacaacctgaaacaataaaccaatatatgtcgcgaattttcgcagtttttcaacatcttcatcacttccaccacctaatattgcacc |
33276795 |
T |
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| Q |
108 |
tagaacaacagcaccttctaacaaagctgcagttttatgcagatgaatgaattcaagccgttctaatccgacgtcagataaaccttctgaattgatatca |
207 |
Q |
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| T |
33276794 |
aagaacaacagcaccttctaacaaagctgcagttttatgcaaatgaatgaattcaagccgttcgagtccgacatcggataaaccttctgagtttatatca |
33276695 |
T |
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| Q |
208 |
acaacttgtccagcaacgagtccttccgagcctattgatttcgctaattcaccgattgcacggacaattctcgccggagaaacatccacggtggagacgg |
307 |
Q |
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| T |
33276694 |
acaacttgtcccgcaacgagtccttccgagcctattgatttcgctaattcaccgattgcacggacaattcgcgccggagaaacatcaacggtggagacgg |
33276595 |
T |
|
| Q |
308 |
caatatgttcgaaagcaaaagcgagaagagcatctccggcgagaacagcaacgtcttctccgaagactttgtggtttgtaggtttacctcgccggagatc |
407 |
Q |
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| T |
33276594 |
caatatgttcgaaagcaaaagcgagaagagcatctccggcgagaacagcaacgtcttctccgaagactttgtggtttgtaggtttacctcgccggagatc |
33276495 |
T |
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| Q |
408 |
gtcgttatccatacaaggaaggtc |
431 |
Q |
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| T |
33276494 |
atcgttatccatacaaggaaggtc |
33276471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 7341163 - 7341245
Alignment:
| Q |
337 |
gcatctccggcgagaacagcaacgtcttctccgaagactttgtggtttgtaggtttacctcgccggagatcgtcgttatccat |
419 |
Q |
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| T |
7341163 |
gcatccccggcaaggacagctacgtcctcaccgtagactttgtggtttgttggctttcctcgtctgagatcgtcgttatccat |
7341245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 7340834 - 7341059
Alignment:
| Q |
8 |
caagaatatcatcaacaacctgaaacaataaaccaatataactcgcgaattttcgcagtttttcaacatcttcatcacttccaccacctaatattgcacc |
107 |
Q |
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||||||| ||||||||||| ||||||||||| |||||||| || || ||||| | | |||||||| || || ||| | |||||||| | |||||| || |
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| T |
7340834 |
caagaatgtcatcaacaacttgaaacaataatccaatatacctagcaaatttccttaatttttcaatttcatcttcagtgccaccaccaactattgctcc |
7340933 |
T |
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| Q |
108 |
tagaacaacagcaccttctaacaaagctgcagttttatgcagatgaatgaattcaagccgttctaatccgacgtcagataaaccttctgaattgatatca |
207 |
Q |
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| T |
7340934 |
cataacaaccgcggcttctaataaagccgcggttttacgaagatgaataaactctagtgtctctaatcccacgtttgattttccttctgattccaaatca |
7341033 |
T |
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| Q |
208 |
acaacttgtccagcaacgagtccttc |
233 |
Q |
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|||| |||||||||||| |||||||| |
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| T |
7341034 |
acaatttgtccagcaactagtccttc |
7341059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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