View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1692_low_1 (Length: 678)

Name: NF1692_low_1
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1692_low_1
NF1692_low_1
[»] chr5 (15 HSPs)
chr5 (14-662)||(36202711-36203358)
chr5 (331-509)||(29006218-29006398)
chr5 (29-165)||(9851275-9851410)
chr5 (319-438)||(9851621-9851740)
chr5 (349-505)||(11042983-11043139)
chr5 (27-94)||(2022648-2022715)
chr5 (21-94)||(43378120-43378193)
chr5 (163-316)||(29006450-29006603)
chr5 (368-422)||(15205202-15205256)
chr5 (57-139)||(29006661-29006743)
chr5 (179-316)||(9851458-9851594)
chr5 (82-165)||(15205483-15205566)
chr5 (168-236)||(9080655-9080724)
chr5 (328-361)||(28270773-28270806)
chr5 (405-507)||(28274093-28274197)
[»] chr8 (7 HSPs)
chr8 (339-513)||(12729135-12729309)
chr8 (318-507)||(28696261-28696450)
chr8 (169-328)||(12729344-12729502)
chr8 (27-165)||(28695947-28696085)
chr8 (62-165)||(12729541-12729644)
chr8 (27-94)||(25953607-25953674)
chr8 (33-165)||(44729228-44729364)
[»] chr3 (14 HSPs)
chr3 (319-508)||(52653523-52653712)
chr3 (15-165)||(52653924-52654075)
chr3 (158-327)||(52653728-52653896)
chr3 (165-307)||(33709804-33709945)
chr3 (368-508)||(50914636-50914776)
chr3 (319-505)||(33709572-33709752)
chr3 (15-165)||(33709981-33710129)
chr3 (168-328)||(40574317-40574477)
chr3 (344-439)||(16729628-16729721)
chr3 (22-108)||(16729894-16729980)
chr3 (461-510)||(23686022-23686071)
chr3 (461-510)||(24058259-24058308)
chr3 (435-507)||(2257449-2257521)
chr3 (25-97)||(29827115-29827187)
[»] chr2 (7 HSPs)
chr2 (335-510)||(34681294-34681469)
chr2 (329-488)||(14219075-14219233)
chr2 (21-79)||(42779878-42779936)
chr2 (330-394)||(14891583-14891647)
chr2 (21-95)||(716045-716118)
chr2 (26-79)||(16272130-16272183)
chr2 (180-256)||(34681118-34681195)
[»] chr4 (22 HSPs)
chr4 (318-508)||(24129520-24129710)
chr4 (318-502)||(48780039-48780222)
chr4 (335-474)||(1516526-1516664)
chr4 (341-507)||(20251147-20251312)
chr4 (327-478)||(1494959-1495110)
chr4 (414-507)||(122829-122922)
chr4 (27-97)||(3415597-3415667)
chr4 (16-97)||(3425145-3425227)
chr4 (343-417)||(1533060-1533134)
chr4 (27-97)||(18736848-18736918)
chr4 (22-94)||(18670524-18670597)
chr4 (57-138)||(48779718-48779799)
chr4 (168-251)||(20251439-20251523)
chr4 (25-95)||(30020297-30020367)
chr4 (339-405)||(46324378-46324444)
chr4 (15-107)||(20251618-20251710)
chr4 (431-478)||(1533134-1533180)
chr4 (163-286)||(24391830-24391951)
chr4 (48-95)||(32429731-32429778)
chr4 (27-97)||(18716175-18716245)
chr4 (15-162)||(24129144-24129292)
chr4 (25-73)||(47071118-47071166)
[»] chr7 (12 HSPs)
chr7 (327-502)||(12239809-12239983)
chr7 (15-165)||(12239438-12239590)
chr7 (320-514)||(1840394-1840589)
chr7 (15-134)||(37469058-37469178)
chr7 (15-165)||(24870567-24870718)
chr7 (327-489)||(24870206-24870367)
chr7 (169-324)||(12239628-12239782)
chr7 (36-97)||(5436975-5437036)
chr7 (327-402)||(1829807-1829883)
chr7 (380-452)||(24533212-24533284)
chr7 (319-479)||(34091651-34091806)
chr7 (15-96)||(23756987-23757068)
[»] chr6 (7 HSPs)
chr6 (319-505)||(28612324-28612508)
chr6 (33-94)||(28611983-28612044)
chr6 (163-322)||(28612144-28612303)
chr6 (169-251)||(11931984-11932066)
chr6 (82-165)||(11932104-11932187)
chr6 (15-97)||(24075623-24075706)
chr6 (39-94)||(21937271-21937326)
[»] chr1 (16 HSPs)
chr1 (169-329)||(49053745-49053905)
chr1 (15-165)||(49061524-49061674)
chr1 (27-165)||(49053944-49054081)
chr1 (163-329)||(49061325-49061491)
chr1 (335-508)||(49053554-49053713)
chr1 (27-97)||(21432110-21432180)
chr1 (27-97)||(44524463-44524533)
chr1 (15-97)||(35624693-35624776)
chr1 (335-509)||(49061133-49061293)
chr1 (331-446)||(17458230-17458345)
chr1 (36-95)||(48366498-48366557)
chr1 (330-492)||(50059269-50059430)
chr1 (36-97)||(29681289-29681350)
chr1 (319-393)||(10917398-10917470)
chr1 (319-366)||(52282180-52282226)
chr1 (21-97)||(43358433-43358510)
[»] scaffold0007 (4 HSPs)
scaffold0007 (318-509)||(217508-217689)
scaffold0007 (330-502)||(215646-215816)
scaffold0007 (169-322)||(217708-217861)
scaffold0007 (36-97)||(217956-218017)


Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 14 - 662
Target Start/End: Complemental strand, 36203358 - 36202711
Alignment:
Q  14 cagaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 113  Q
    |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36203358 cagaacctatgttggggtctgctgtaataacttcatcaagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggcca 36203259  T
Q  114 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaat 213  Q
    ||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36203258 cactaacctttaagttcgattcgtccccaccagttatgccaaccggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatctgcaat 36203159  T
Q  214 ggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaataatttagtataattatcggcagaatttagactcaaaacaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||    
T  36203158 ggtagcttacaaaataaagttctgacaaattctctcgtacac-taaagaagagaacgaataatttagtataattttcggcagaatttagactcacaccaa 36203060  T
Q  314 tgtaattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattac 413  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36203059 tgtgattttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatggttac 36202960  T
Q  414 attgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 513  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  36202959 attgattcaattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttcaaatatattttaaaaatttctctcacaattaat 36202860  T
Q  514 acaccaatgttcatgtgtctgtttgtacaattttcttatgcgttcaattgcatataaaggagatgtcatttctgtgttgccaagaacaaacggctaaaat 613  Q
    ||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  36202859 acaccaatgttcatgtgtctggttgtacgattttcttatgtgttcaattgtatataaaggagatgtcatttctgtgttgccaagaacaaacggctaaaaa 36202760  T
Q  614 gatgataacaactttgtggcgagtatatttaaacggttgctatctttca 662  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36202759 gatgataacaactttgtggcaagtatatttaaacggttgctatctttca 36202711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 331 - 509
Target Start/End: Complemental strand, 29006398 - 29006218
Alignment:
Q  331 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaa 430  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||| |||| | || ||    
T  29006398 aaagtgtctctatttatagagaaacttatgtcatttggtgaagggaaacaaccctttaaaagattttgttcatgaatggttacattgcttcaatcgtaaa 29006299  T
Q  431 gcattacaccttttct---ctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 509  Q
     |||||||| |||| |   ||||||| | |||||| ||  |||||||||||| || ||||||||| ||||||||||||||||    
T  29006298 acattacacttttttttttctaaaagatctctttt-aattattgcaacttttcaattatattttggaaatttctctcacaat 29006218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 29 - 165
Target Start/End: Original strand, 9851275 - 9851410
Alignment:
Q  29 ggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagt 128  Q
    |||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||||| |||| ||    
T  9851275 ggtctgctgcaataacttgatcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggt 9851374  T
Q  129 tcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    || |||| |||| |||||||| || ||||| ||||||    
T  9851375 tcaattctccct-accagttaagccaaccgaatgcaa 9851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 319 - 438
Target Start/End: Original strand, 9851621 - 9851740
Alignment:
Q  319 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 418  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| ||| | |||||||||| ||||||| | | ||||     
T  9851621 ttttctgcctccaaaatgtctctatttacagagaaacttatgtcttttggtgaagagaaataaccatttgacagagtttgtttatgaatggtcagattgc 9851720  T
Q  419 ttcagttgtcaagcattaca 438  Q
    |||| |||||||||| ||||    
T  9851721 ttcaattgtcaagcaataca 9851740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 349 - 505
Target Start/End: Original strand, 11042983 - 11043139
Alignment:
Q  349 gagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacaccttttctct 448  Q
    |||||||| ||||| ||||||| ||| ||  |||||||| ||||||||||||||||||||  || ||||||| | | | ||| |||||||||||||||||    
T  11042983 gagaaactcatgtcctttggtgtagataatcaaccctttgaaagagtttgttcatgaatggctagattgattaaatggacaaacattacaccttttctct 11043082  T
Q  449 aaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 505  Q
    ||||| | | | |||||||  || ||||||| |||||||||||||||||||| ||||    
T  11043083 aaaagatctttatttaaccgatgaaacttttcaaatatattttgaaaatttcactca 11043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 2022648 - 2022715
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 94  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  2022648 ggggtctgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatt 2022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 43378120 - 43378193
Alignment:
Q  21 tgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 94  Q
    |||||||||||||||||||||||||| | || ||| |||||||||||||| || ||||| ||||||||||||||    
T  43378120 tgtgttggggtctgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtgcacataaatt 43378193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 29006603 - 29006450
Alignment:
Q  163 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagctt-acaaaataaagttctgacaaattctctcgtacacctaaag 261  Q
    |||| ||||||||||| |||| | ||| |||||| |||| |||||| ||||| ||| || ||| |||||||||||| ||| || |||||| ||| || |     
T  29006603 caatggaatccttgacatgacatacacattcacaccaagcgtatcgtcaatgttagttttacagaataaagttctgtcaacttatctcgtgcac-tagaa 29006505  T
Q  262 aagagaacgaataatttagtataattatcggcagaatttagactcaaaacaatgt 316  Q
    || |||| |||| ||||||||||||| |  |||||||||||||||| || |||||    
T  29006504 aaaagaatgaatgatttagtataatttttagcagaatttagactcacaagaatgt 29006450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 15205256 - 15205202
Alignment:
Q  368 gtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattca 422  Q
    ||||| |||||||||| |||  |||||||||||||||||||||||||||| ||||    
T  15205256 gtgaatagaaataaccatttgtaagagtttgttcatgaatgattacattgcttca 15205202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 29006743 - 29006661
Alignment:
Q  57 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccc 139  Q
    ||||| |||||||| || |||||  ||||||||||||| ||  ||||||||| | ||||||||| |||| |||||||||||||    
T  29006743 atgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgccc 29006661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 9851458 - 9851594
Alignment:
Q  179 gtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaacgaataattt 278  Q
    |||| |||||| |||||| |||| ||||||||||||||   ||||| ||||||||| || || ||||||| || || ||| |||| |||| || | ||||    
T  9851458 gtgatttgcacattcacaccaagcgtatcgacaatggtgttttacagaataaagttttgtcacattctcttgtgca-ctagagaaaagaaagactgattt 9851556  T
Q  279 agtataattatcggcagaatttagactcaaaacaatgt 316  Q
    ||||| ||| | |||||||||| |||||| || |||||    
T  9851557 agtattatttttggcagaattttgactcacaataatgt 9851594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 15205566 - 15205483
Alignment:
Q  82 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    |||| |||||||| ||  ||||||||||| ||||||||| || | |||||||||| || ||||||||||||  || ||||||||    
T  15205566 gtgcccataaatttcaaagcgtgtgtgggacacactaactttgaggttcgattcgtccccaccagttatgccgactggatgcaa 15205483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 9080655 - 9080724
Alignment:
Q  168 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttct 236  Q
    |||| |||||||| |||||||| ||||||| ||  |||| || ||||||||| |||||||||||||||||    
T  9080655 gaattcttgacgtaacttgcacattcacattaaacgtatagatcaatggtagtttacaaaataaagttct 9080724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 28270773 - 28270806
Alignment:
Q  328 tccaaagtgtctctatttatagagaaacttatgt 361  Q
    |||||||| |||||||||||||||||||||||||    
T  28270773 tccaaagtatctctatttatagagaaacttatgt 28270806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 507
Target Start/End: Original strand, 28274093 - 28274197
Alignment:
Q  405 aatgattacattgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaa--tatattttgaaaatttctc 502  Q
    |||| |||||||| |||| | |||||||| |||| | |||| ||||||||||  | || |||||||||||||||  |||  ||||||||| || ||||||    
T  28274093 aatggttacattgtttcaatagtcaagcaatacatcgtttcactaaaaggttcatattcaaccattgcaactttccaaatttatattttggaagtttctc 28274192  T
Q  503 tcaca 507  Q
    |||||    
T  28274193 tcaca 28274197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 339 - 513
Target Start/End: Complemental strand, 12729309 - 12729135
Alignment:
Q  339 tctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattaca 438  Q
    |||||||| ||||||| ||||||| | ||||||||||||| ||| ||||| ||||||||| ||||||||| ||| |||| |||| ||||| |||||||||    
T  12729309 tctatttacagagaaatttatgtcctgtggtgaagagaaacaactctttagaagagtttgctcatgaatggttatattgcttcaattgtcgagcattaca 12729210  T
Q  439 ccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 513  Q
    ||||||||||||||||| ||| ||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  12729209 ccttttctctaaaaggtctctatttaaccattgcaactttccaaatatattttggaaatttctctcacaaataat 12729135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 318 - 507
Target Start/End: Original strand, 28696261 - 28696450
Alignment:
Q  318 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 417  Q
    ||||||||  |||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||    
T  28696261 attttctgcatccaaagtgtctctatttatggagaaacttatgttctttggtgaagagaaacatccctttagaagagtttgttcatgaatggttacattg 28696360  T
Q  418 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 507  Q
     |||| |||| ||||||||||| ||||||||||||| | ||| |||| ||||||||||||||   | ||||||| |||||| ||||||||    
T  28696361 cttcaattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttttcgaaatattttaaaaattactctcaca 28696450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 169 - 328
Target Start/End: Complemental strand, 12729502 - 12729344
Alignment:
Q  169 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 268  Q
    |||||||||| |||||||||| |||||| ||||  |||||||||| |||| ||||  |||||||||||| ||| ||||||||| || ||| |||| ||||    
T  12729502 aatccttgacatgacttgcacattcacaccaagcatatcgacaattgtagtttactgaataaagttctgtcaatttctctcgtgca-ctagagaaaagaa 12729404  T
Q  269 cgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtct 328  Q
     |||| ||||||||||||| |||||||||||| ||| || |||||||| |||||||||||    
T  12729403 agaattatttagtataattttcggcagaattttgacacacaacaatgtgattttctgtct 12729344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 28695947 - 28696085
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaa 126  Q
    ||||| || ||||||||||| | |||||| |||||||| |||||||| |||||   ||| |||||||||||  ||||||||||| ||||||||| ||||     
T  28695947 ggggtttgttgcaataacttgaccaagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgtgggacacactaacttttag 28696046  T
Q  127 gttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    ||| |||||||||||||||||||||  |||| |||||||    
T  28696047 gtttgattcgccctcaccagttatgtcaaccagatgcaa 28696085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 12729644 - 12729541
Alignment:
Q  62 gaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggat 161  Q
    |||||||||||| |||||  || ||||| |||||||  | ||||||||| ||||||||| |||| || |||||||||  |||||||||||| ||||||||    
T  12729644 gaagatgaacatgatgaaaagtacacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggat 12729545  T
Q  162 gcaa 165  Q
    ||||    
T  12729544 gcaa 12729541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 25953674 - 25953607
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 94  Q
    |||||||| ||||||||||| | |||||| || ||||||||||| || ||||| ||||||||||||||    
T  25953674 ggggtctgatgcaataacttaaccaagaagataatgaagatgaatatgatgaagtgtgcacataaatt 25953607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 44729364 - 44729228
Alignment:
Q  33 tgctgcaataacttcatcaagaatatgatgaagatgaacataa----tgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagt 128  Q
    |||| ||||||||| |||||||| || ||||| |||||||| |    ||||  ||||||||||||||||  |||||||||||  |||||||| |||| ||    
T  44729364 tgctacaataacttgatcaagaagataatgaaaatgaacatgaatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgt 44729265  T
Q  129 tcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    || |||| |||   | |||||||| ||||||||||||    
T  44729264 tcaattcacccctgcgagttatgccaaccggatgcaa 44729228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 6e-48; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 319 - 508
Target Start/End: Complemental strand, 52653712 - 52653523
Alignment:
Q  319 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 418  Q
    ||||||| ||||||||||||| | | ||||||||||||| |||| ||||||||||||| | |||| |||||||||||||||||||||||| ||||||||     
T  52653712 ttttctgcctccaaagtgtctttgtctatagagaaacttgtgtcctttggtgaagagacacaaccatttaaaagagtttgttcatgaatggttacattgc 52653613  T
Q  419 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 508  Q
     ||| ||||||| || ||||||||||| ||||||||| | | ||||| ||||||||||||  |||||||||||| |||||||||||||||    
T  52653612 atcaattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctcacaa 52653523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 52654075 - 52653924
Alignment:
Q  15 agaacctgtgtt-ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 113  Q
    |||||||||||| ||||| ||| |||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||||  ||||||||||| ||    
T  52654075 agaacctgtgtttggggtttgcggcaataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtgtgggaca 52653976  T
Q  114 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    ||||||| |||| |||| ||||||||||||||||||||| ||||||||||||    
T  52653975 cactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaa 52653924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 158 - 327
Target Start/End: Complemental strand, 52653896 - 52653728
Alignment:
Q  158 ggatgcaatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacct 257  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||  ||||| || ||    
T  52653896 ggatacaatggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaatggtagtttacagaataaagttctgtcaattttcctcgtgca-ct 52653798  T
Q  258 aaagaagagaacgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtc 327  Q
    | |||| || | |||| ||||||||||||| || |||||||||| ||||| |||||||||||||||||||    
T  52653797 agagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaattttctgtc 52653728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 33709945 - 33709804
Alignment:
Q  165 atagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaag 264  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| |||||||||| || || ||| ||||     
T  33709945 atagaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttacagaataaagttctgtcaaattctctggtgca-ctagagaaa 33709847  T
Q  265 agaacgaataatttagtataattatcggcagaatttagactca 307  Q
    |||| |||| ||||||||||||| |||||| ||||||||||||    
T  33709846 agaaagaatgatttagtataattttcggcaaaatttagactca 33709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 368 - 508
Target Start/End: Original strand, 50914636 - 50914776
Alignment:
Q  368 gtgaagagaaataaccctttaaaagagtttgtt-catgaatgattacattgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaac 466  Q
    ||||||||||| |||| |||  ||||||||||| |||||||| || ||||| |||| |||||||||||||||||||| ||||||||||| ||| ||||||    
T  50914636 gtgaagagaaaaaacc-tttggaagagtttgtttcatgaatggttgcattgcttcaattgtcaagcattacacctttactctaaaaggtctctatttaac 50914734  T
Q  467 cattgcaacttttgaaatatattttgaaaatttctctcacaa 508  Q
    ||||||||||||| ||||||||||||||||||||||| ||||    
T  50914735 cattgcaacttttcaaatatattttgaaaatttctctaacaa 50914776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 319 - 505
Target Start/End: Complemental strand, 33709752 - 33709572
Alignment:
Q  319 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 418  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||| |||||          ||||||||     
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctttggtgaagggaaagaaccctttgaaagattttgt----------ttacattgc 33709663  T
Q  419 ttcagttgtcaagcattacacc--ttttctctaaaaggtttctttttaaccattgcaacttttgaaata---tattttgaaaatttctctca 505  Q
    |||| |||| ||||||||||||  |||| | |||||||| || |||||||||||||||||||  |||||   ||||||| ||||||||||||    
T  33709662 ttcaattgtaaagcattacaccttttttttataaaaggtctc-ttttaaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 33710129 - 33709981
Alignment:
Q  15 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccac 114  Q
    |||||||||||||||||||||||||||| ||| | |||||| ||||| | || |||||| ||||| ||||||| |||||||||  ||||||||||| |||    
T  33710129 agaacctgtgttggggtctgctgcaatatcttgaccaagaaaatgat-atgaagaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgggacac 33710032  T
Q  115 actaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    |||||| |||| | ||||||| ||  |||||||||||  ||||||||||||    
T  33710031 actaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaa 33709981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 168 - 328
Target Start/End: Original strand, 40574317 - 40574477
Alignment:
Q  168 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagag 266  Q
    ||||| |||||||||||||||| ||||||  ||| ||||| | ||||| ||| ||||| |||||||||||| ||| ||||||||| ||| || |||| ||    
T  40574317 gaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcac-tagagaaaag 40574415  T
Q  267 aacgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttctgtct 328  Q
    || |||| ||||| ||| ||| |||||||||||| |||||| || ||||| ||||| |||||    
T  40574416 aaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgattttgtgtct 40574477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 344 - 439
Target Start/End: Complemental strand, 16729721 - 16729628
Alignment:
Q  344 ttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacac 439  Q
    ||||||||||| | ||||| ||||||||||||||| ||| ||| |||||||||| ||||||||| ||||||||| |||| | |||||| |||||||    
T  16729721 ttatagagaaagt-atgtcttttggtgaagagaaacaactctt-aaaagagtttcttcatgaattattacattgcttcaatagtcaagtattacac 16729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 16729980 - 16729894
Alignment:
Q  22 gtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtg 108  Q
    |||| |||||||||||||||||||| ||||| || | ||||||||||||||| || || ||||||||| |||| ||  |||||||||    
T  16729980 gtgtcggggtctgctgcaataacttgatcaataagaagatgaagatgaacatgataaagtgtgcacattaatttcaaagcgtgtgtg 16729894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 23686071 - 23686022
Alignment:
Q  461 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 510  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  23686071 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 23686022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 461 - 510
Target Start/End: Complemental strand, 24058308 - 24058259
Alignment:
Q  461 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 510  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  24058308 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 24058259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 435 - 507
Target Start/End: Original strand, 2257449 - 2257521
Alignment:
Q  435 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 507  Q
    |||| |||||||||||| ||| ||| ||||| ||||||||||||| |||||||||||  |||||||| |||||    
T  2257449 tacatcttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttctatcaca 2257521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 29827115 - 29827187
Alignment:
Q  25 ttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    |||||||||||||||||||||  | |||||| |||||||||||||  || ||||| | || ||||||||||||    
T  29827115 ttggggtctgctgcaataactcgaccaagaaaatgatgaagatgactatgatgaagtttgaacataaattcca 29827187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 335 - 510
Target Start/End: Original strand, 34681294 - 34681469
Alignment:
Q  335 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 434  Q
    |||| ||||||||||||||| ||||||| ||||| ||||| ||| ||| ||||  |||||||||||||| |||| | |||||| |||| ||||||| |||    
T  34681294 tgtccctatttatagagaaatttatgtcttttggggaagaaaaacaactcttttgaagagtttgttcatcaatggtaacattgcttcaattgtcaaacat 34681393  T
Q  435 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 510  Q
    ||||| ||||||||||||||||| | ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34681394 tacactttttctctaaaaggtttatgtttaaccattgcaacattccaaatatattttgaaaatttctctcacaatt 34681469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 329 - 488
Target Start/End: Original strand, 14219075 - 14219233
Alignment:
Q  329 ccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtc 428  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||||| ||||||||  |||||||||| |||| ||||     
T  14219075 ccaaagtgtctctatttatagagaaacttatgccatttggtgaagagaaacaacactttgaaagagttggttcatgaccgattacattgcttcaattgta 14219174  T
Q  429 aagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatat 488  Q
    ||||||| ||| |||||||| |||| ||||| |||||| |||||||| ||| ||||||||    
T  14219175 aagcattgcacattttctct-aaagatttctatttaactattgcaacatttcaaatatat 14219233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 42779878 - 42779936
Alignment:
Q  21 tgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaa 79  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  42779878 tgtgttggggtctgctgcaataacttgaccaagaagatgatgaagatgaacataatgaa 42779936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 14891647 - 14891583
Alignment:
Q  330 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagag 394  Q
    ||||||||||||| ||||||| |||| |||||||||||||| ||||| | ||| |||| ||||||    
T  14891647 caaagtgtctctacttatagaaaaacatatgtcatttggtgcagagatacaactctttgaaagag 14891583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 716045 - 716118
Alignment:
Q  21 tgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 95  Q
    ||||||| |||||||||||||||||| | |||||| |||||||| ||||| || |||||  || |||||||||||    
T  716045 tgtgttgaggtctgctgcaataacttgaccaagaagatgatgaa-atgaatatgatgaagcgtacacataaattc 716118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 16272130 - 16272183
Alignment:
Q  26 tggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaa 79  Q
    ||||||||||||||||||||| |  ||||| ||||| ||||||||||| |||||    
T  16272130 tggggtctgctgcaataacttgactaagaagatgataaagatgaacatgatgaa 16272183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 34681118 - 34681195
Alignment:
Q  180 tgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacc 256  Q
    |||||||||| ||||||||||| ||||||| ||||| ||| ||||  ||||||||| || ||| ||||||||| ||||    
T  34681118 tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgtaataaagttttgtcaatttctctcgttcacc 34681195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 318 - 508
Target Start/End: Original strand, 24129520 - 24129710
Alignment:
Q  318 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 417  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||  |||||||| |||  ||||||||||||||||||| ||||||||    
T  24129520 attttttgcctccagagtgtctctatttatagagaaacttatgtcatttggttaaggaaaataaccatttggaagagtttgttcatgaatggttacattg 24129619  T
Q  418 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 508  Q
     |||| || ||||||| ||||||||| ||| |||| |  | | |||||||||||| |||||  ||||||||||||| ||||||||||||||    
T  24129620 cttcaattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaatatattttgataatttctctcacaa 24129710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 318 - 502
Target Start/End: Original strand, 48780039 - 48780222
Alignment:
Q  318 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 417  Q
    |||||||| ||||||||| ||| |||||||||| ||||| | ||| ||||||| ||||||| |||| || |||||| ||| |||||||||  ||| ||||    
T  48780039 attttctgcctccaaagtatctttatttatagataaactcaagtcttttggtgtagagaaacaacctttgaaaagaatttattcatgaatagttatattg 48780138  T
Q  418 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 502  Q
     |||| ||||||| ||||| |||||||||||||||| | | | ||||| ||||||||||||  ||||||||||||||||||||||    
T  48780139 cttcaattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatattttgaaaatttctc 48780222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 335 - 474
Target Start/End: Original strand, 1516526 - 1516664
Alignment:
Q  335 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 434  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||||| ||||| |||||||||||||| ||| ||||  ||| || | |||||     
T  1516526 tgtctctatttctagagaaacttatgtcatttggtgaacggaaataaccctttgaaagattttgttcatgaatggttatattgcgtcatttctaaagcac 1516625  T
Q  435 tacaccttttctctaaaaggtttctttttaaccattgcaa 474  Q
    |||||||||||||||||| || || |||||||||||||||    
T  1516626 tacaccttttctctaaaatgtctc-ttttaaccattgcaa 1516664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 341 - 507
Target Start/End: Complemental strand, 20251312 - 20251147
Alignment:
Q  341 tatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacacc 440  Q
    |||||||||||||||||||||| |||||| |||| ||| |||  ||||| |||||| ||||||||||  |||||||| |||| || |||| || |||||     
T  20251312 tatttatagagaaacttatgtcctttggtaaagaaaaacaactatttaagagagtt-gttcatgaatagttacattgtttcaattatcaaacaatacact 20251214  T
Q  441 ttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 507  Q
    ||||||||||||| | ||| |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  20251213 ttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaaatttctctcaca 20251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 327 - 478
Target Start/End: Original strand, 1494959 - 1495110
Alignment:
Q  327 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaag-agtttgttcatgaatgattacattgattcagtt 425  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||  |||| || ||||| |||| | |||||||||||||| ||| |||| ||||  |    
T  1494959 ctccaaaatgtctctttttatagagaaacttatgtcatttggtgaacggaaacaaacctttgaaagaattttgttcatgaatggttatattgcttcaact 1495058  T
Q  426 gtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttt 478  Q
    || |||| |||||||||||||||||| ||| || |||||||||||||||||||    
T  1495059 gtaaagctttacaccttttctctaaatggtctc-ttttaaccattgcaacttt 1495110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 414 - 507
Target Start/End: Complemental strand, 122922 - 122829
Alignment:
Q  414 attgattcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 507  Q
    |||| |||| |||||||||| ||||| |||||||||||| |||||| |||||| |||||||||||| ||||||| |||| ||||||||||||||    
T  122922 attgtttcaattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctctcaca 122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 3415667 - 3415597
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    |||||||||||||||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||||    
T  3415667 ggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcacataaattcca 3415597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 3425227 - 3425145
Alignment:
Q  16 gaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    ||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||||| || || |||||||||||||||||    
T  3425227 gaacctgtgttggggatctgctgcaataacttgaccaagaagatgatgaagatgaacatgataaagtgtgcacataaattcca 3425145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 417
Target Start/End: Original strand, 1533060 - 1533134
Alignment:
Q  343 tttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 417  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||| |||| ||| ||||    
T  1533060 tttatagagaaacttatgtcatttgatgaagggaaacaaccctttgaaagattttgttcataaatggttatattg 1533134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 18736848 - 18736918
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    ||||||||||| ||||||||  ||||||| ||||| ||||||||| | ||||| |||||||||||||||||    
T  18736848 ggggtctgctgtaataacttggtcaagaagatgattaagatgaacttgatgaagtgtgcacataaattcca 18736918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 18670524 - 18670597
Alignment:
Q  22 gtgttggg-gtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 94  Q
    |||||||| ||||| ||||||||||| | |||||| ||||| ||||||||||| ||||| ||||||||||||||    
T  18670524 gtgttgggcgtctgttgcaataacttgaccaagaagatgataaagatgaacatgatgaagtgtgcacataaatt 18670597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 48779718 - 48779799
Alignment:
Q  57 atgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgcc 138  Q
    ||||| ||||||||||| ||||| |||||| ||||||| ||  |||||||||||  |||||||| |||| ||||||||||||    
T  48779718 atgataaagatgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcc 48779799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 20251523 - 20251439
Alignment:
Q  168 gaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgt 251  Q
    ||||| |||| ||| |||| || ||||||||||||||||||| ||||| ||| ||||| |||||||||||| ||| |||||||||    
T  20251523 gaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatgatagtttacataataaagttctgtcaatttctctcgt 20251439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 30020367 - 30020297
Alignment:
Q  25 ttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 95  Q
    ||||| |||||||||||||||| | |||||| |||||||||||||  || ||||| |||||| ||||||||    
T  30020367 ttgggatctgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtgcatataaattc 30020297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 46324444 - 46324378
Alignment:
Q  339 tctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatga 405  Q
    ||||| |||||| ||||||||||| | | ||||||||||| ||| ||||| ||||||||||||||||    
T  46324444 tctatatatagaaaaacttatgtcctcttgtgaagagaaacaactctttagaagagtttgttcatga 46324378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 20251710 - 20251618
Alignment:
Q  15 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgt 107  Q
    |||| |||||||||||||||||| ||||  || |  ||||| ||||||||||||||||| |||||  || |||||||||| ||  ||||||||    
T  20251710 agaatctgtgttggggtctgctgtaatagtttgactaagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaagcgtgtgt 20251618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 478
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  431 gcattacaccttttctctaaaaggtttctttttaaccattgcaacttt 478  Q
    |||||||||||||||||||| |||| || |||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctc-ttttaaccattgcaacttt 1533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 24391951 - 24391830
Alignment:
Q  163 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaaga 262  Q
    |||| |||||||||  ||||||||||| | |||| |||  |||||||||||| ||| ||||| ||||||||| || ||| ||||||| | || ||| |||    
T  24391951 caatggaatccttggtgtgacttgcacat-cacaccaaacgtatcgacaatgatagtttacagaataaagttatgtcaatttctctcatgca-ctagaga 24391854  T
Q  263 agagaacgaataatttagtataat 286  Q
    | |||| |||| ||||||||||||    
T  24391853 aaagaaagaatgatttagtataat 24391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 32429778 - 32429731
Alignment:
Q  48 atcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 95  Q
    |||||||  ||||||||||||||||| ||||| |||||||||||||||    
T  32429778 atcaagatgatgatgaagatgaacatgatgaagtgtgcacataaattc 32429731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 18716175 - 18716245
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    ||||||||||| ||||||||   |||||| ||||| ||||||||| | ||||| |||| ||||||||||||    
T  18716175 ggggtctgctgtaataacttggccaagaagatgattaagatgaacttgatgaagtgtgtacataaattcca 18716245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 24129144 - 24129292
Alignment:
Q  15 agaacctgtgttgg-ggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 113  Q
    ||||| |||||||| |||| |||  ||||| || ||||||||   ||||| |||||| || |||||  ||||||||||||||||  || |||| ||| ||    
T  24129144 agaacatgtgttggaggtcagctataataatttgatcaagaaggcgatgatgatgaatatgatgaaaagtgcacataaattccaaagcatgtgcgggaca 24129243  T
Q  114 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatg 162  Q
    || |||  ||||| || ||||| ||| |||||||||||| |||| ||||    
T  24129244 cattaatctttaactttgattctcccccaccagttatgccaaccagatg 24129292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 47071118 - 47071166
Alignment:
Q  25 ttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacat 73  Q
    |||||||||||| ||||||||| |  ||||| |||||||||||||||||    
T  47071118 ttggggtctgctacaataacttgactaagaagatgatgaagatgaacat 47071166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 327 - 502
Target Start/End: Original strand, 12239809 - 12239983
Alignment:
Q  327 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttg 426  Q
    ||||||||||||| ||||||||||||||||||| || |||| | |||||    |||| ||| |||||||||||||||||||| ||||||||  ||| |||    
T  12239809 ctccaaagtgtctttatttatagagaaacttatatcctttgatcaagagccgcaaccatttgaaagagtttgttcatgaatggttacattgcatcaattg 12239908  T
Q  427 tcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 502  Q
    ||||||| ||||| ||||| ||||||||| | | ||||||||||||||| ||| |||||||||||| |||||||||    
T  12239909 tcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaatatattttggaaatttctc 12239983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 12239438 - 12239590
Alignment:
Q  15 agaacctgtgttgg-ggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 113  Q
    ||||| |||||||| ||| |||||||||||||| || ||||| ||||||| |||||| || ||||| |||||||||||||| ||  ||||||||||| ||    
T  12239438 agaacttgtgttggaggtttgctgcaataacttgattaagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgggaca 12239537  T
Q  114 cactaacgtttaagttcgattcgccctcaccagttatg-caaaccggatgcaa 165  Q
    || |||| |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  12239538 cattaacctttaggttcgattcgcccccaccagttatgtcaaaccggatgcaa 12239590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 320 - 514
Target Start/End: Complemental strand, 1840589 - 1840394
Alignment:
Q  320 tttctgtctccaaagtgtctctatttatagagaaacttatgt-catttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 418  Q
    |||||| ||||||| ||||||||||||||||||||||||||| | |||| |||||| | | |||  |||| |||| |||||||||||||| ||||| |      
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtccttttgatgaagaaagacaactttttagaagaatttgttcatgaatggttacaatac 1840490  T
Q  419 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaa--tatattttgaaaatttctctcacaattaata 514  Q
    || | || ||||| |||||||| |||  ||||||||| || | |||||||||||||||||| |||  |||||||| |||||| |||||||||||||||    
T  1840489 ttgaattatcaagaattacaccattt-actaaaaggtctc-tcttaaccattgcaacttttcaaatttatattttaaaaattactctcacaattaata 1840394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 37469178 - 37469058
Alignment:
Q  15 agaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 113  Q
    |||||||||||||||| | ||| |||||||||| |||||||| ||||||||||||||||| || || |||||||||||||| ||  | ||||||||| ||    
T  37469178 agaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgggaca 37469079  T
Q  114 cactaacgtttaagttcgatt 134  Q
    ||||||| |||| ||| ||||    
T  37469078 cactaacctttaggtttgatt 37469058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 24870718 - 24870567
Alignment:
Q  15 agaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggcca 113  Q
    ||||||| |||||||| | |||||||||||||| || ||||| |||||||||||  |||| ||||||  | |||||||||||||   | ||| |||| ||    
T  24870718 agaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagatagacatgatgaataatacacataaattccacatcttgtatgggaca 24870619  T
Q  114 cactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
      ||||| ||||||||||||||||||  ||||||||||| ||||||||||||    
T  24870618 tgctaacctttaagttcgattcgcccctaccagttatgccaaccggatgcaa 24870567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 327 - 489
Target Start/End: Complemental strand, 24870367 - 24870206
Alignment:
Q  327 ctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttg 426  Q
    |||||||||||||||||||||||||||| ||||||| |   |||||||||||||||  |||| ||||||||||| || || | ||| | || |||| |      
T  24870367 ctccaaagtgtctctatttatagagaaaattatgtcttacagtgaagagaaataactatttagaagagtttgttaataaacggttagactgcttcattga 24870268  T
Q  427 tcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatatt 489  Q
    ||| |||||||||| |||| ||||||||| |  ||||||| |||||||||||| |||| ||||    
T  24870267 tcacgcattacaccctttcactaaaaggtct-attttaactattgcaacttttcaaatttatt 24870206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 169 - 324
Target Start/End: Original strand, 12239628 - 12239782
Alignment:
Q  169 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 268  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||||||| || || ||||||||| || ||| || ||| ||| | ||| |||  ||||    
T  12239628 aatccttgacgtgacttgcacattcacaccaagcgtatcgacaatggtagtttccagaataaagttttgtcaatttatctagtata-ctagagataagaa 12239726  T
Q  269 cgaataatttagtataattatcggcagaatttagactcaaaacaatgtaattttct 324  Q
     |||||||||| ||| ||| |||||||||||   || || |||||||| |||||||    
T  12239727 agaataatttaatattattttcggcagaattctaacacacaacaatgtgattttct 12239782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 5437036 - 5436975
Alignment:
Q  36 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    ||||||||||| | |||||| ||||||||||||||||| ||||| |||||| ||||||||||    
T  5437036 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcca 5436975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 1829807 - 1829883
Alignment:
Q  327 ctccaaagtgtctctatttatagagaaacttatgtcattt-ggtgaagagaaataaccctttaaaagagtttgttca 402  Q
    ||||||| ||||||||||||||||||||||| |||| ||| | | |||| ||| ||| ||||||||||||| |||||    
T  1829807 ctccaaaatgtctctatttatagagaaacttgtgtcctttcgataaagataaacaactctttaaaagagttcgttca 1829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 452
Target Start/End: Complemental strand, 24533284 - 24533212
Alignment:
Q  380 aaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcattacaccttttctctaaaa 452  Q
    |||||||| |||| ||||||||||||||| |||||||| | || |||| || |||||||  ||||||||||||    
T  24533284 aaccctttgaaagtgtttgttcatgaatggttacattgctacaattgttaaacattacatattttctctaaaa 24533212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 479
Target Start/End: Original strand, 34091651 - 34091806
Alignment:
Q  319 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 418  Q
    |||||||||||  |||||||| |||||||| ||||| |||||   |||| |||| ||||| ||| ||||||     ||| |||||||||||||||| |      
T  34091651 ttttctgtctctcaagtgtctttatttataaagaaatttatgatctttgatgaacagaaacaactctttaat----ttttttcatgaatgattacactac 34091746  T
Q  419 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaactttt 479  Q
    |||| || |||| |||||||| |||| | |||||||| | | ||||||||||| |||||||    
T  34091747 ttcaattatcaaacattacacatttt-tttaaaaggtctttatttaaccattgtaactttt 34091806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 23756987 - 23757068
Alignment:
Q  15 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcc 96  Q
    ||||||| ||||||||| ||  |||| ||||| |  ||||| ||||||||||||||||| |||||  ||| |||||||||||    
T  23756987 agaacctttgttggggtttggagcaagaacttgactaagaaaatgatgaagatgaacatgatgaagagtgaacataaattcc 23757068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 319 - 505
Target Start/End: Original strand, 28612324 - 28612508
Alignment:
Q  319 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattga 418  Q
    ||||||| ||| ||||||||| | |||||| ||||||||||||||||||||||||| ||| || | |||  ||||||||||||||||||  ||| ||||     
T  28612324 ttttctgcctcgaaagtgtctatctttataaagaaacttatgtcatttggtgaagaaaaacaatcatttggaagagtttgttcatgaattgttatattgc 28612423  T
Q  419 ttcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 505  Q
    |||| ||||||| || ||||||||| ||||||||||  ||| |||||||||| |||  ||| |||||||||||| ||||||||||||    
T  28612424 ttcaattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaa--ttttaaatatattttggaaatttctctca 28612508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 28611983 - 28612044
Alignment:
Q  33 tgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 94  Q
    |||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||||||    
T  28611983 tgctgcaataacttgatcaagaagatgatgaatatgaacatgatgaagtgtgcacataaatt 28612044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 163 - 322
Target Start/End: Original strand, 28612144 - 28612303
Alignment:
Q  163 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaag 261  Q
    |||| ||||||||||||||||||| || |||||| ||||  |||||  |||||||||  ||||||| || |||||| ||| | | ||||| ||| || ||    
T  28612144 caatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagtatacaaaacaatgttctgtcaattcccctcgtgcac-tagag 28612242  T
Q  262 aagagaacgaataatttagtataattatcggcagaatttagactcaaaacaatgtaatttt 322  Q
    |  |||| |||| ||||||||||||| |||||||||||| |||||| || ||||| |||||    
T  28612243 ataagaaagaatgatttagtataattttcggcagaatttcgactcacaagaatgtgatttt 28612303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 11932066 - 11931984
Alignment:
Q  169 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgt 251  Q
    ||||||||| |||||||||   |||||| ||||| ||||||||||||||| ||| | |||||| ||||| |||||||||||||    
T  11932066 aatccttgatgtgacttgcttattcacaccaagtttatcgacaatggtagtttatagaataaaattctgtcaaattctctcgt 11931984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 11932187 - 11932104
Alignment:
Q  82 gtgcacataaattccatggcgtgtgtgggccacactaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    ||||||||||||| ||  || ||||| || ||||||||| |||| ||| ||||||||| ||| |||||||| ||||||||||||    
T  11932187 gtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaa 11932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 24075623 - 24075706
Alignment:
Q  15 agaacctgtgtt-ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    |||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||| || |  || |||||| ||||||||||    
T  24075623 agaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatgacaaagtgtgcatataaattcca 24075706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 21937271 - 21937326
Alignment:
Q  39 aataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaatt 94  Q
    |||||||| | |||||| |||||||||||||| || ||||| ||||||||||||||    
T  21937271 aataacttgaccaagaagatgatgaagatgaatatgatgaagtgtgcacataaatt 21937326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 169 - 329
Target Start/End: Complemental strand, 49053905 - 49053745
Alignment:
Q  169 aatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagagaa 268  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||||||||| |||||||||||||||||| ||| ||| ||||| || ||| |||||||||    
T  49053905 aatccttgacgtgacttgcacattcacaccaagcatatcgacaatggtagtttacaaaataaagttctgccaatttccctcgtgca-ctagagaagagaa 49053807  T
Q  269 cgaataatttagtataa-ttatcggcagaatttagactcaaaacaatgtaattttctgtctc 329  Q
     |||| ||||||||||| || | |||||||||  ||| || |||||||| ||||| ||||||    
T  49053806 agaatgatttagtataattttttggcagaattatgacacacaacaatgtgattttatgtctc 49053745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 49061674 - 49061524
Alignment:
Q  15 agaacctgtgttggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccac 114  Q
    ||||| ||||||||||||||||||||||| || | ||| || |||| |||||||||||| ||||| ||||||||||||||| |  |||||||||||  ||    
T  49061674 agaacttgtgttggggtctgctgcaataattttaccaaaaagatgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaac 49061575  T
Q  115 actaacgtttaagttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    ||||   |||| ||||||||||||| |||||||||||| |||  |||||||    
T  49061574 actagtctttaggttcgattcgcccccaccagttatgccaactagatgcaa 49061524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 49054081 - 49053944
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattccatggcgtgtgtgggccacactaacgtttaa 126  Q
    |||||||||||| |||| || | ||| || |||| |||||||||||| ||||| ||| |||||||||||||  |||||||||||  |||||||| ||||     
T  49054081 ggggtctgctgcgataattt-accaaaaagatgaagaagatgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttag 49053983  T
Q  127 gttcgattcgccctcaccagttatgcaaaccggatgcaa 165  Q
    ||||||||||||| |||||||||| | ||| ||||||||    
T  49053982 gttcgattcgcccccaccagttataccaactggatgcaa 49053944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 49061491 - 49061325
Alignment:
Q  163 caatagaatccttgacgtgacttgcacgttcacatcaagtgtatcgacaatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaaga 262  Q
    |||| ||||||||||||||| |||||| |||||| |||   ||||||||||||||| ||||| ||||||||| || ||| ||| ||||| || ||| |||    
T  49061491 caatggaatccttgacgtgatttgcacattcacaccaaacatatcgacaatggtagtttacagaataaagttttgtcaatttccctcgtgca-ctagaga 49061393  T
Q  263 agagaacgaataatttagtataa-ttatcggcagaatttagactcaaaacaatgtaattttctgtctc 329  Q
    | |||| |||| ||||||||||| || |||||||||||  ||| || |||||||| ||||| ||||||    
T  49061392 aaagaaagaatgatttagtataatttttcggcagaattatgacacacaacaatgtgattttatgtctc 49061325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 335 - 508
Target Start/End: Complemental strand, 49053713 - 49053554
Alignment:
Q  335 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 434  Q
    ||||| |||||||| | ||||||||||| ||||||||||||| | || | ||| |||||||||||| ||||||| ||||||||              ||     
T  49053713 tgtctatatttatataaaaacttatgtcctttggtgaagagacacaatcatttgaaagagtttgtttatgaatggttacattg--------------caa 49053628  T
Q  435 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 508  Q
    ||||||||||| ||||||||| | | ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaa 49053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 21432180 - 21432110
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||  |||| |||||||||||||||||    
T  21432180 ggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtgcacataaattcca 21432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 44524533 - 44524463
Alignment:
Q  27 ggggtctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| | |||||||||||||||    
T  44524533 ggggtctgttgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattcca 44524463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 35624693 - 35624776
Alignment:
Q  15 agaacctgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    ||||| |||||||||| |||||||||||||||| | |||||| |||||||||||||| || | ||| |||||||||||||||||    
T  35624693 agaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaatattacgaagtgtgcacataaattcca 35624776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 335 - 509
Target Start/End: Complemental strand, 49061293 - 49061133
Alignment:
Q  335 tgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaagcat 434  Q
    |||||||||||||| ||||||||||||| ||| ||||||||| | ||   ||| ||||| |||||| ||||||| ||||||||              ||     
T  49061293 tgtctctatttatatagaaacttatgtcctttcgtgaagagacacaattatttgaaagaatttgtttatgaatggttacattg--------------caa 49061208  T
Q  435 tacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 509  Q
    ||||||| ||| ||||||||| | | ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  49061207 tacacctattcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaat 49061133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 331 - 446
Target Start/End: Complemental strand, 17458345 - 17458230
Alignment:
Q  331 aaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtcaa 430  Q
    ||||| |||| ||||||||| ||||||||||| ||||||||||||||| |||   || ||||| ||||||| |||||| ||||||||  | | |||||||    
T  17458345 aaagtatctcaatttatagataaacttatgtcctttggtgaagagaaacaactacttgaaagaatttgttcttgaatggttacattgcatgaattgtcaa 17458246  T
Q  431 gcattacaccttttct 446  Q
     ||||||  |||||||    
T  17458245 acattacttcttttct 17458230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 48366557 - 48366498
Alignment:
Q  36 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattc 95  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||| |||||| ||||||||    
T  48366557 tgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattc 48366498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 492
Target Start/End: Complemental strand, 50059430 - 50059269
Alignment:
Q  330 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtca 429  Q
    |||||||||| |||||||||| || |||||||| ||| ||||| ||||| | |  |||||||||| ||||| | ||||| |||||||| ||   |  |||    
T  50059430 caaagtgtctttatttatagaaaatcttatgtcttttagtgaacagaaaca-ctttttaaaagagcttgtttacgaatggttacattgctttgatgttca 50059332  T
Q  430 agcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttg 492  Q
    |||||||||||| ||| ||| || || ||| |||||| | ||||| |||| ||||||||||||    
T  50059331 agcattacacctcttcactataatgtctctatttaacgactgcaattttttaaatatattttg 50059269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 29681289 - 29681350
Alignment:
Q  36 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    ||||||||||| | |||||| ||||||||||||||||| ||||| |||||| ||||||||||    
T  29681289 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcca 29681350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 10917470 - 10917398
Alignment:
Q  319 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaaga 393  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| ||| ||||||||| | ||| |||| |||||    
T  10917470 ttttctgcctccaaagtgtct--atttatagagaaacttatgtcctttagtgaagagatacaactctttgaaaga 10917398  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 52282180 - 52282226
Alignment:
Q  319 ttttctgtctccaaagtgtctctatttatagagaaacttatgtcattt 366  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||||||    
T  52282180 ttttctgtctc-aaagtgtctctatttatagataaatttatgtcattt 52282226  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 43358433 - 43358510
Alignment:
Q  21 tgtgttgggg-tctgctgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    |||||||||| ||| ||||||||| || |||||||| |||||||||||||  || |||||  |||||||| |||||||    
T  43358433 tgtgttggggatctactgcaataaattgatcaagaagatgatgaagatgactatgatgaagcgtgcacatgaattcca 43358510  T

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Target: scaffold0007 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 318 - 509
Target Start/End: Complemental strand, 217689 - 217508
Alignment:
Q  318 attttctgtctccaaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattg 417  Q
    |||||||| ||| |||||||||  |||||||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||| |||||   ||| | |||    
T  217689 attttctgcctctaaagtgtct--atttatagagaaacttatgtcatttggtaaagataaacaaccttttgaaagagtttgtccatga---attgctttg 217595  T
Q  418 attcagttgtcaagcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 509  Q
    |     |||||||| ||||| | ||||||||||||| | ||| |||||||||||||||||||  | ||||||| | ||||||||||||||||    
T  217594 a-----ttgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctcacaat 217508  T

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Target: scaffold0007; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 330 - 502
Target Start/End: Complemental strand, 215816 - 215646
Alignment:
Q  330 caaagtgtctctatttatagagaaacttatgtcatttggtgaagagaaataaccctttaaaagagtttgttcatgaatgattacattgattcagttgtca 429  Q
    |||||||||||| | |||||| ||||||||||| |||||||||||||||| |||||||||| |  |||||| ||||||| |||||    |||| | ||||    
T  215816 caaagtgtctctgtctatagaaaaacttatgtcctttggtgaagagaaatgaccctttaaatggatttgtttatgaatggttaca--acttcaatcgtca 215719  T
Q  430 agcattacaccttttctctaaaaggtttctttttaaccattgcaacttttgaaatatattttgaaaatttctc 502  Q
    | |||||||  ||||||  ||||| | ||| ||||||||||||||||||  |||||||||||| |||||||||    
T  215718 aacattacatattttcttcaaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

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Target: scaffold0007; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 169 - 322
Target Start/End: Complemental strand, 217861 - 217708
Alignment:
Q  169 aatccttgacgtgacttgcacgttcacatcaagtgtatcga-caatggtagcttacaaaataaagttctgacaaattctctcgtacacctaaagaagaga 267  Q
    ||||||||| | ||||||||| |||||| |||||||||||| ||||||||| ||||||||||| |||||| ||| |||||||||  | ||| |||| |||    
T  217861 aatccttgaagagacttgcacattcacaccaagtgtatcgatcaatggtagtttacaaaataatgttctgccaatttctctcgt-gaactagagaaaaga 217763  T
Q  268 acgaataatttagtataattatcggcagaatttagactcaaaacaatgtaatttt 322  Q
    | |||| |||||| || ||| |||||||||||  ||| || |||||||| |||||    
T  217762 aagaattatttagaattattttcggcagaattctgacacacaacaatgtgatttt 217708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 218017 - 217956
Alignment:
Q  36 tgcaataacttcatcaagaatatgatgaagatgaacataatgaattgtgcacataaattcca 97  Q
    ||||||||||| |  || || |||||||||||||||||||||||| ||||||||||||||||    
T  218017 tgcaataacttgacaaaaaagatgatgaagatgaacataatgaatagtgcacataaattcca 217956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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