View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1692_low_11 (Length: 437)

Name: NF1692_low_11
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1692_low_11
NF1692_low_11
[»] chr1 (7 HSPs)
chr1 (1-423)||(47770222-47770645)
chr1 (167-303)||(47774251-47774387)
chr1 (179-238)||(6498396-6498455)
chr1 (1-87)||(47774467-47774553)
chr1 (170-215)||(47712167-47712212)
chr1 (179-238)||(6515938-6515997)
chr1 (172-214)||(47744717-47744759)
[»] chr5 (5 HSPs)
chr5 (165-311)||(27369430-27369576)
chr5 (167-275)||(28829754-28829862)
chr5 (172-275)||(28855459-28855562)
chr5 (172-238)||(28860665-28860731)
chr5 (186-237)||(28875242-28875293)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 47770645 - 47770222
Alignment:
Q  1 taaattccatatctccttggctggaaccttttaacaatctttttacagcaatcatttgtccatcaggaagcttcccctgaaatatataaaggtatagtaa 100  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47770645 taaattccacatctccttggctggaatcttttaacaatctttttacagcaatcatttgtccatcaggaagcttcccctgaaatatataaaggtatagtaa 47770546  T
Q  101 nnnnnnnnnnctttt-ctatgataatattttgcagaagatgatattttcatgaataattgaaatgggtatcttacccgataaacaactccaaatccgcct 199  Q
               |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47770545 attatattttttttttctatgataatattttgcagaagatgatattttcatgaataattgaaatgggtatcttacccgataaacaactccaaatccgcct 47770446  T
Q  200 tgcccaagtttattagaattcgagaagtcatttgtagcagctcggacggtatcaaagttaaattgaaatgactcaacaattgttatttcatcttcatctg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47770445 tgcccaagtttattagaattcgagaagtcatttgtagcagctcggacgatatcaaagttaaattgaaatgactcaacaattgttatttcatcttcatctg 47770346  T
Q  300 catcagcatattctccatcatcggcttcacgaacaataatcaattaagataaagaagttagtgtttcatatatgataattgctataaatgtaatagaagt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47770345 catcagcatattctccatcatcggcttcacgaacaataatcaattaagatgaagaagttagtgtttcatatatgataattgctataaatgaaatagaagt 47770246  T
Q  400 acagaccattgagatctaatttct 423  Q
    ||||||||||||||||||||||||    
T  47770245 acagaccattgagatctaatttct 47770222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 47774387 - 47774251
Alignment:
Q  167 tatcttacccgataaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagcagctcggacggtatcaaagttaaattgaa 266  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||||||||  ||||||||| |||||||| |||| | |||||||||||||||||| |    
T  47774387 tatcttacccgataaacaactccgaacccaccttgtccaagtttattagaatcggagaagtcacttgtagcaactcgtatggtatcaaagttaaattgca 47774288  T
Q  267 atgactcaacaattgttatttcatcttcatctgcatc 303  Q
    | ||||| ||||| || ||||||||||||||| ||||    
T  47774287 aagactcgacaatcgtaatttcatcttcatcttcatc 47774251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 6498396 - 6498455
Alignment:
Q  179 taaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagca 238  Q
    ||||||||||| ||||||||||  ||||||| |||||||| |||||||||||||||||||    
T  6498396 taaacaactccgaatccgccttctccaagttgattagaatgcgagaagtcatttgtagca 6498455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 47774553 - 47774467
Alignment:
Q  1 taaattccatatctccttggctggaaccttttaacaatctttttacagcaatcatttgtccatcaggaagcttcccctgaaatatat 87  Q
    ||||||||| ||||||||||   ||| ||||  |||||||||| || |||||||||||||||| ||| ||||| |||||||||||||    
T  47774553 taaattccacatctccttggtcagaatctttggacaatcttttgaccgcaatcatttgtccattagggagcttgccctgaaatatat 47774467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 47712167 - 47712212
Alignment:
Q  170 cttacccgataaacaactccaaatccgccttgcccaagtttattag 215  Q
    |||||| |||||||||||||||||||||| || |||||||||||||    
T  47712167 cttacctgataaacaactccaaatccgccatgtccaagtttattag 47712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 6515938 - 6515997
Alignment:
Q  179 taaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagca 238  Q
    ||||||||||| ||||| ||||| |||||||||| |||||  ||||| ||||||||||||    
T  6515938 taaacaactccgaatcctccttgtccaagtttatcagaatctgagaaatcatttgtagca 6515997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 47744717 - 47744759
Alignment:
Q  172 tacccgataaacaactccaaatccgccttgcccaagtttatta 214  Q
    |||| |||||||||||||||||||||| || ||||||||||||    
T  47744717 tacctgataaacaactccaaatccgccatgtccaagtttatta 47744759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 27369430 - 27369576
Alignment:
Q  165 ggtatcttacccgataaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagcagctcggacggtatcaaagttaaattg 264  Q
    |||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||| ||| | |||||| || | | | ||||||||||||||||    
T  27369430 ggtatcatacccgataaacaattccaaatccaccttgtccaagtttattagaattagagaaatcactcgtagcaacttgtatgatatcaaagttaaattg 27369529  T
Q  265 aaatgactcaacaattgttatttcatcttcatctgcatcagcatatt 311  Q
     ||||||||||| || || || || |||||| || ||||| ||||||    
T  27369530 caatgactcaacgatcgtcatatcctcttcacctccatcatcatatt 27369576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 28829754 - 28829862
Alignment:
Q  167 tatcttacccgataaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagcagctcggacggtatcaaagttaaattgaa 266  Q
    ||||| ||| |||||||| |||||||||| ||||||||||||||||||||||   |||| |||||||||||| |||  |  || |||||||||||||| |    
T  28829754 tatctcacctgataaacagctccaaatccaccttgcccaagtttattagaatcacagaaatcatttgtagcaactcttatagtgtcaaagttaaattgta 28829853  T
Q  267 atgactcaa 275  Q
    |||||||||    
T  28829854 atgactcaa 28829862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 28855459 - 28855562
Alignment:
Q  172 tacccgataaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagcagctcggacggtatcaaagttaaattgaaatgac 271  Q
    |||| |||||||| |||||||||||||||  ||||||||||||||||  |||||||||||||||||| ||   || || |||||||| ||||| ||||||    
T  28855459 tacctgataaacagctccaaatccgccttcgccaagtttattagaatcagagaagtcatttgtagcaacttttacagtgtcaaagttgaattgtaatgac 28855558  T
Q  272 tcaa 275  Q
    ||||    
T  28855559 tcaa 28855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 28860665 - 28860731
Alignment:
Q  172 tacccgataaacaactccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagca 238  Q
    |||| |||| ||| ||||||||||||||| |||||||||||||||||  ||||||||||||||||||    
T  28860665 tacctgatatacagctccaaatccgccttccccaagtttattagaatctgagaagtcatttgtagca 28860731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 28875242 - 28875293
Alignment:
Q  186 ctccaaatccgccttgcccaagtttattagaattcgagaagtcatttgtagc 237  Q
    |||||||||| |||| |||||||||||||||||  |||||||||||||||||    
T  28875242 ctccaaatccaccttccccaagtttattagaatcagagaagtcatttgtagc 28875293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University