View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_12 (Length: 391)
Name: NF1692_low_12
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 2223467 - 2223111
Alignment:
| Q |
16 |
taattaaccatcaccttatgatctcgtgaaagtggcaccgctacaccgccactacaaagcaccgcccttgagtcaccacaattcgccactacaatctcct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223467 |
taattaaccatcaccttatgatctcgtgaaagtggcaccgctacaccgccactacaaagcaccgcccttgagtcaccacaattcgccactacaatctcct |
2223368 |
T |
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| Q |
116 |
ccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccattttcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2223367 |
ccttccccaccaccaccacagccgccgtcgaacccacggtattcccatcaacctcatcaccacaacttccaccgactccaatttcactatccatcttcat |
2223268 |
T |
|
| Q |
216 |
aaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcagcctatcacggcaagca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2223267 |
aaaacaagaacacatagcttcacaccaatccaatccatgattcctcctaccctccttcacttcctccgccaacaacaagtgcaacctatcacggcaagca |
2223168 |
T |
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| Q |
316 |
ttcgccaccgtcataccaccatgaccgtcataaaccgcaaagaaatcataaccgcac |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223167 |
ttcgccaccgtcataccaccatgaccgtcataaaccgcaaagaaatcataaccgcac |
2223111 |
T |
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