View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1692_low_14 (Length: 360)
Name: NF1692_low_14
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 199 - 344
Target Start/End: Original strand, 11708525 - 11708672
Alignment:
| Q |
199 |
aatcaaaatatcatccttaaattt--atttaaaagattgacatttttcgacatatatttttccaatttttgctctcactgttttactatattttaaataa |
296 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11708525 |
aatcaaaatatcatccttaaatttttatttaagagattgacatttttcgacatatatttttccaatttttgctctcactgttttactatattttaaataa |
11708624 |
T |
|
| Q |
297 |
aactttgtataaagaatactatagtgtataatcatggaaagatttctt |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11708625 |
aactttgtataaagaatactatagtgtataatcatggaaagatttctt |
11708672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 11708326 - 11708467
Alignment:
| Q |
2 |
gagagagatgaagggcaaagaaattggaaagggaagtgatgttggaaaagaaagtgaaaatgaagaggttctaaagaagattattgctagccatcctttg |
101 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11708326 |
gagagagatggagagtaaagaaattggaaagggaagtgatgttggaaaagaaagtgaaaatgaagaggttctaaagaagattattgcaagccatcctttg |
11708425 |
T |
|
| Q |
102 |
tttgaagtattgattgagtctcacatcaattgtttgaaggta |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11708426 |
tttgaagtattgattgagtctcacatcaattgtttgaaggta |
11708467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University