View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_16 (Length: 345)
Name: NF1692_low_16
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 34 - 330
Target Start/End: Original strand, 53901762 - 53902055
Alignment:
| Q |
34 |
cctctaagccaaatctttgatatagaaaaactctcctttctactccttccaataccagcaccctcactagtactacctttaacaacatcctcagctctgg |
133 |
Q |
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| T |
53901762 |
cctctaagccaaatctttgatatagaaaaactctcctttctactccttccaataccagcaccctcactagtactacctttaacaacatcctcagctctgg |
53901861 |
T |
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| Q |
134 |
ctgaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctggaatcaaaggtaaaacannnnnnnn |
233 |
Q |
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| T |
53901862 |
ctgaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctggaatcaaaggtaaaaca---ttctt |
53901958 |
T |
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| Q |
234 |
nnnnnnnnngctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaa |
330 |
Q |
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| T |
53901959 |
cttcttcttgctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaa |
53902055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 34 - 330
Target Start/End: Complemental strand, 3958721 - 3958428
Alignment:
| Q |
34 |
cctctaagccaaatctttgatatagaaaaactctcctttctactccttccaataccagcaccctcactagtactacctttaacaacatcctcagctctgg |
133 |
Q |
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||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
3958721 |
cctctgagcctaatctttgatatagaaaaactctcctttcttctccttccaataccagcaccctcactagtaatacctttaacaacatcctcagctctag |
3958622 |
T |
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| Q |
134 |
ctgaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctggaatcaaaggtaaaacannnnnnnn |
233 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
3958621 |
ctgaataaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctgtgacctggaatcaaaggcaaaacattcttctt |
3958522 |
T |
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| Q |
234 |
nnnnnnnnngctcaattgctgctttattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaa |
330 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958521 |
cttctta---ctcaactgctgcttcattggagttctaattggtacctgcaatgatgaagtttcatccataatataagcaaatgatcccattgaaaaa |
3958428 |
T |
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