View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_2 (Length: 672)
Name: NF1692_low_2
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 12 - 663
Target Start/End: Original strand, 52108649 - 52109297
Alignment:
| Q |
12 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108649 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
52108748 |
T |
|
| Q |
112 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108749 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
52108848 |
T |
|
| Q |
212 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52108849 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
52108948 |
T |
|
| Q |
312 |
accccatgtaacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaattgtttgg |
411 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52108949 |
accccatgtaacagtaggcatctcgtattccggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaa---tttgg |
52109045 |
T |
|
| Q |
412 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgtgaaca |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52109046 |
ggatttggaagtggatttggatttaattggtgagaaattagcttggaaacattaacattgcgtgatgaaagtatattgaggaattttcttcttgtgaaca |
52109145 |
T |
|
| Q |
512 |
ttgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtggtgaaaatgaagaaggtggcttcaagtgtgaagaaaacagtgttcctaaag |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52109146 |
ttgatttgacagtggaagtgaagcactgagtgcagaaatatggagtgtgatgaaaatgaagaaggtgacttcaagtgtgaagaaaacagtgttcctaaag |
52109245 |
T |
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| Q |
612 |
aaattttgaggtttcaaaagagtaatgaattaagcataagtcaccacaggtt |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
52109246 |
aaattttgaggtttcaaaagagtaatgaattaagcataattcaccaccggtt |
52109297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 44519922 - 44520314
Alignment:
| Q |
12 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcccaattttttctaaataccctaaaacaggaatcatgttttttctaacacta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||| |||||| |
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| T |
44519922 |
aacctgtggataattcttaataaattcaccaagtttagacctagaaatcc-aattttttataaataccctaaaatacgaatcatgttttttctcacacta |
44520020 |
T |
|
| Q |
112 |
caacccaaaatcaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44520021 |
caacccaaaattaaaggatactgatttatatcatcaatcgttaaccctaatttctgaataaactcaacacgttccctcatgacttcaacggttgaaggaa |
44520120 |
T |
|
| Q |
212 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgacccgcgaaacgagtttctctttgcggccttgaatcac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
44520121 |
gctccaaatcctgcaattcatcaggaataattcccaaacccttgagataatcgaagatgatgaccctcgaaacgagtttctctttgcgaccttgaatcac |
44520220 |
T |
|
| Q |
312 |
accccatgtaacagtaggcatctcgtattcgggaaatttggaatcttgggttccatagagattgaatagtaaaaccctaaaattgtttgaaatt |
405 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
44520221 |
accccatgtaacagtaggcatctcgtattcaggaaatttggaatcttgggttccatagagattgaagaataaaaccctaaaattgtttgaaatt |
44520314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 468 - 555
Target Start/End: Original strand, 44526207 - 44526294
Alignment:
| Q |
468 |
attgcgtgatgaaagtatattgaggaattttcttcttgtgaacattgatttgacagtggaagtgaagcactgagtgcagaaatatgga |
555 |
Q |
| |
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|||||||||||| | |||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||| |||||||| |||||| |
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| T |
44526207 |
attgcgtgatgagaatatagtgaggaattttcttcttgtgagcattgatttgatagaggaagtgaagcactgggtgcagaattatgga |
44526294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 412 - 463
Target Start/End: Original strand, 44520337 - 44520388
Alignment:
| Q |
412 |
ggatttggaagtggatttggatttaattggtgagaaattagcttagaaacat |
463 |
Q |
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|||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |
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| T |
44520337 |
ggatgtggaagtgcatttggatataattggtgtgaaattagcttagaaacat |
44520388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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