View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_25 (Length: 243)
Name: NF1692_low_25
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 51067961 - 51068177
Alignment:
| Q |
16 |
ttattcacctctcaatgttacataaacaaccgatgcgggacttgttttctctcttgttagacaaaacacatgttatctacctatttctatgttatatatt |
115 |
Q |
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| T |
51067961 |
ttattcacctctcaatgttacataaacaaccgatgtgggacttgttttctctcttgttagacaaaacacatgttatctacctatttctatgttatatatt |
51068060 |
T |
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| Q |
116 |
acaagttgtaacacctccctctagatagaatttggatatccaacatgccaagcttgtaatgcatattagagagccttgctatcttatttaatacattcct |
215 |
Q |
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| T |
51068061 |
acaagttgtaacacctccctctagatagaatttggatatccaacatgccaagcttgtaatgcatattagagagccttgctatcttatttaatacattcct |
51068160 |
T |
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| Q |
216 |
tttttattcagcagtat |
232 |
Q |
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||||||||||||||||| |
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| T |
51068161 |
tttttattcagcagtat |
51068177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 42334832 - 42334945
Alignment:
| Q |
116 |
acaagttgtaacacctccctctagatagaatttggatatccaacatgccaagcttgtaatgcatattagagagccttgctatcttatttaatacattcct |
215 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| || |
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| T |
42334832 |
acaagttgtaacacctccctcaagatagaatgtggatatccaacatgcctagcttgtaatgcatattagaga----tcctatcttatttaatacattact |
42334927 |
T |
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| Q |
216 |
ttttt-attcagcagtat |
232 |
Q |
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| T |
42334928 |
tttttgattcagcagtat |
42334945 |
T |
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