View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_29 (Length: 233)
Name: NF1692_low_29
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 13074908 - 13075108
Alignment:
| Q |
16 |
aaaatccatctatcttattttcattttatgtttcctcatatatatataaggggtcctatatttggattattactcgcaaacaacgctccagtgaaacttg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13074908 |
aaaatccatctatcttattttcattttatgtttcctcatatatatat--ggggtcctatatttggattattactcgcaaacaatgctccagtgaaacttg |
13075005 |
T |
|
| Q |
116 |
caattttatttatcatcaatagagcttatgagattgagaagacattaatcactnnnnnnntctattttaagagtgnnnnnnntagatgtggtatagtttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
13075006 |
caattttatttatcatcaatagagcttatgagattgagaagacattaatcactaaaaaaatctattttaagagtgaaaaaaatagatgtagtatagtttc |
13075105 |
T |
|
| Q |
216 |
aac |
218 |
Q |
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||| |
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| T |
13075106 |
aac |
13075108 |
T |
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