View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_30 (Length: 224)
Name: NF1692_low_30
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 37697374 - 37697219
Alignment:
| Q |
1 |
ttagacggcaaccaactcacaggtacaataccggagtcctacggctcgttcccaaaatcctttatgtcaatgactatctcgcgaaacctcctctccggga |
100 |
Q |
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| T |
37697374 |
ttagacggcaaccaactcacaggtacagtaccggagtcctacggctcgttcccaaaatcctttatgtcaatgactatctcgcgaaacctcctctccggga |
37697275 |
T |
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| Q |
101 |
agattcccgcgtctccggtaaagctgaacttggagcatctggacttgtcactcaac |
156 |
Q |
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| T |
37697274 |
agattcccgcgtttctggtaaagctgaacttggagcatctggacttgtcactcaac |
37697219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 38013715 - 38013909
Alignment:
| Q |
4 |
gacggcaaccaactcacaggtacaataccggagtcctacggctcgttcccaaaatcctttatgtcaatgactatctcgcgaaacctcctctccgggaaga |
103 |
Q |
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| T |
38013715 |
gacggcaaccaactcaaaggtacaataccggagtcctacggctcattcccaaaatccttttcgtggctgtctctttcgcgaaaccgcctctccgggaata |
38013814 |
T |
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| Q |
104 |
ttcccgcgtctccggtaaagctgaacttggagcatctggacttgtcactcaacgcgttggagggtgatgcttctgtgttttttgggtccaagaaa |
198 |
Q |
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| T |
38013815 |
ttccggcgtctttagcaaagctgaacttggcgttattggacttgtcagggaacaagttggaaggtgatgcttccgtgttattcgggtccaagaaa |
38013909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 37994256 - 37994353
Alignment:
| Q |
79 |
tcgcgaaacctcctctccgggaagattcccgcgtctccggtaaagctgaacttggagcatctggacttgtcactcaacgcgttggagggtgatgcttc |
176 |
Q |
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| T |
37994256 |
tcgcgaaaccgtctctccgggaagattccagcgtctctggggaagctgaatttgcagattttggacttgtcatggaacgcgtttaagggtgatgcttc |
37994353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 25326612 - 25326800
Alignment:
| Q |
10 |
aaccaactcacaggtacaataccggagtcctacggctcgttcccaaaatcctttatgtcaatgactatctcgcgaaacctcctctccgggaagattcccg |
109 |
Q |
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| T |
25326612 |
aaccaactcactggtacaataccagaatcctacggctcgttgccaaaatcctttatgtgctttggtctcgcggaaaaccgcttaaccgggaagattccgg |
25326711 |
T |
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| Q |
110 |
cgtctccggtaaagctgaacttggagcatctggacttgtcactcaacgcgttggagggtgatgcttctgtgttttttgggtccaagaaa |
198 |
Q |
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| T |
25326712 |
cgtctctagcaaatttgaacttggtgttggtgaacttgtcagggaacgcgttggaaggtgatgcttctgtattgtttgggtccaagaaa |
25326800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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