View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_4 (Length: 646)
Name: NF1692_low_4
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 293 - 630
Target Start/End: Complemental strand, 28982528 - 28982190
Alignment:
| Q |
293 |
tttaaaattctctagtttagcaactaataattaaacttataaaaacacctacatgcatgcatcctatatatggtgtgagagtttgatggatttcttttcc |
392 |
Q |
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| T |
28982528 |
tttaaaattctctagtttaggaactaataattaaacttataaaaacacctacatgcatgcatcctatatatggtgt-agagtttgatgggtttcttttcc |
28982430 |
T |
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| Q |
393 |
atatatcttacattgcatatagatgttgtaatgtgtcactatcaaaattcaacatatatcatatctaacctattatcactgtaatgtgtcactaactttt |
492 |
Q |
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| T |
28982429 |
atatatcttacat--------gatgttgtaatgtgtcactatcaaaattcaacatatttcatatctaacctattatcactgtaatgtgtcactaactttt |
28982338 |
T |
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| Q |
493 |
tcattcatgcaatgcaag-----------gtgtactcattattattaattattgtatgatgnnnnnnnnattgaccaaattattcgtgcagaagacactt |
581 |
Q |
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| T |
28982337 |
tcattcatgcaatgcaaggaggtgttggcgtgtactcattattactaattattgtatgctg-tttttttattgaccaaattattcgtgcagaagacactt |
28982239 |
T |
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| Q |
582 |
ctccataaccaacgttgattagtagcatatttagtaatggtaaattaac |
630 |
Q |
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| T |
28982238 |
ctccataaccaacgttgattagtagcatatttagtgatggtaaattaac |
28982190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 28983560 - 28983343
Alignment:
| Q |
11 |
caaagggagagatgggagacttcatcatttttctacatgccccttagtgaccatcatctctctatttatgcacaatttaaattttcttaattgtagaatt |
110 |
Q |
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| T |
28983560 |
caaacggagagaggggagacttcatcatttttctacatgccctttagtgaccatcatctctctatttatgcacaatttaaattttcttaattgtagaatt |
28983461 |
T |
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| Q |
111 |
tccacatatcaacttgcctcaaccaataatattatgccaagtgtacttcatcatacgtcatattgaatcataacagcgtggtgtgaatcaaatctaaaac |
210 |
Q |
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| T |
28983460 |
tccacgtatcaacttgcctcaaccaataatattatgccaagtgtacttcatcatatgtcatattgaatcataacagcgtggtgtgaatcaaatctaaaac |
28983361 |
T |
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| Q |
211 |
acatattagttctaaata |
228 |
Q |
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| T |
28983360 |
acatattggttctaaata |
28983343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 28982766 - 28982711
Alignment:
| Q |
246 |
atgttttataattttccccaacaaccgtttttctaacaaaggacccatttaaaatt |
301 |
Q |
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| T |
28982766 |
atgttttataattttccccaacaaccgtttttccaacaaaggactcatttaaaatt |
28982711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 459
Target Start/End: Complemental strand, 28966592 - 28966535
Alignment:
| Q |
401 |
tacattgcatatagatgttgtaatgtgtcactatcaaaattcaacatatatcatatcta |
459 |
Q |
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| T |
28966592 |
tacattgcatatagatgttgtaatgcatgattatcaaaattcaa-atatatcacatcta |
28966535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 11364665 - 11364716
Alignment:
| Q |
35 |
tcatttttctacatgccccttagtgaccatcatctctctatttatgcacaat |
86 |
Q |
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| T |
11364665 |
tcatttttcttcataccccttagtgatcatcatttctctatttatgcacaat |
11364716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 42863764 - 42863689
Alignment:
| Q |
11 |
caaagggagagatgggagacttcatcatttttctacatgccccttagtgaccatcatctctctatttatgcacaat |
86 |
Q |
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| T |
42863764 |
caaaaggagagaagagagacttggtcatttttcttcatacctcttagtgaccatcattcctctatttatgcacaat |
42863689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 32471318 - 32471359
Alignment:
| Q |
124 |
ttgcctcaaccaataatattatgccaagtgtacttcatcata |
165 |
Q |
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| T |
32471318 |
ttgcctcaaccaataatattatgccaagcgtatttcctcata |
32471359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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