View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1692_low_5 (Length: 528)
Name: NF1692_low_5
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 514
Target Start/End: Complemental strand, 12584194 - 12583688
Alignment:
| Q |
9 |
gaagaaaatggtgagagcagaggaatactacggaagagcgattctagcgaatcctgaagatgcggaattgctttcgctttacggaaagttgatatgggaa |
108 |
Q |
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| T |
12584194 |
gaagaatatggtgagagcagaggaatactacggaagagcgattctagcgaatcctgaagatgcggaattgctttcgctttacggaaagttgatatgggaa |
12584095 |
T |
|
| Q |
109 |
atgagtagagatgaagaaagagctaaatcttactttgatcaagcaattcatgttgatcctgatgataggtattaatattatacattcatcttatgtttta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12584094 |
atgagtagagatgaagaaagagctaaatcttactttgatcaagcaattcatgttgatcctgatgataggtattaatattatacattcatcttatgtttta |
12583995 |
T |
|
| Q |
209 |
ataatagttccattaatagtagttaatgatcataataacttggatttaactaatgagtttaacttggatttacactgactgtataaaattatttacacat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12583994 |
ataatagttccattaatagtagttaatgatcataataacttggatttaactaatgagtttaacttggatttccactgactgtataaaattatttacacat |
12583895 |
T |
|
| Q |
309 |
gtatcaaaagatttgtctccaatttatgnnnnnnnaaacttatgtgttgctacattagtggatgtatgtgtaaaataattttacactatcagtgtatact |
408 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12583894 |
gtatcaaaagatttgtctccaatttatgttttttaaaacttatgtgttgctacattagtggatgtatgtgcaaaataattttacactatcagtgtatact |
12583795 |
T |
|
| Q |
409 |
atttaaactcttaacttatatagcgtgagtgtaaatgtaaccc-nnnnnnntagtgtgagtgtaaatattttccagtcaatcataatcatcacttaatga |
507 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
12583794 |
atttaaactcttaacttatatagtgtgagtgtaaatgtaacccaaaaaaaatagtgtgagtgtaaatattttccggtcaatcataatcatcacttaataa |
12583695 |
T |
|
| Q |
508 |
taaacat |
514 |
Q |
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| T |
12583694 |
taaacat |
12583688 |
T |
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