View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1692_low_7 (Length: 455)
Name: NF1692_low_7
Description: NF1692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1692_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 47251767 - 47252081
Alignment:
| Q |
13 |
aaaattgagtttagcaaaattgattaaattctcacaactacctgaatcaatgtttaaatcgcgactaagagaaatatctatatatttaatgtctgacaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47251767 |
aaaattgagtttagcaaaattgattaaattctcacaactatctgaatcaatgtttgaatcgcgactaagagaaatatctatatatttaatgtctgacaat |
47251866 |
T |
|
| Q |
113 |
atacgtctcgattaagattactttcaatagattgaacatatataagnnnnnnnnnnnnnnnncatttaagattaatttcgatagattgaacatatatagn |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
47251867 |
atacgtctcgattaagattactttcgatagattgaacatatataagaaacaaaaacaaaaaaca-ttaagattactttcgatagattgaacatatataaa |
47251965 |
T |
|
| Q |
213 |
nnnnnnnnnnnnnnnncatgatactcatacacctttattcttattctgaaaattgcataaggttttagtaaccattttgttttgaaggaaaagttttaga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47251966 |
aaacaaaaacaaaaaacatgatactcatacacctttattcttattctgaaaattgcataaggttttagtaaccattttgttttgaaggaaaagttttaga |
47252065 |
T |
|
| Q |
313 |
tgtgtataggaattat |
328 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47252066 |
tgtgtataggaattat |
47252081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 47252575 - 47252689
Alignment:
| Q |
323 |
aattataaataataacaaggatgcatggtcggacaccctnnnnnnnctagtaagttacaacagtctgagaatcattttcaatattaattaatacgcttga |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47252575 |
aattataaataataacaaggatgcatggtcggacaccttaaaaaaacaa---agttacaacagtctgagaatcattttcaatattaattaatacgcttga |
47252671 |
T |
|
| Q |
423 |
aaatccactaacaaagat |
440 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47252672 |
aaatccactaacaaagat |
47252689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University