View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1693-Insertion-3 (Length: 587)
Name: NF1693-Insertion-3
Description: NF1693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1693-Insertion-3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Original strand, 43716074 - 43716544
Alignment:
| Q |
9 |
atatcactgtcctcctcctccatatttttatctgccgtaatcagagacaacaagaagaagaagctagaaaaaataataacaagttaacaatcatttacaa |
108 |
Q |
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| T |
43716074 |
atatcactgtcctcctcctccatatttttatctgccatagtcagagacaacaagaagaagaagctagaaaaaataataacaaattaacaatcatttacaa |
43716173 |
T |
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| Q |
109 |
tcaccagatcccactcctgcaggtggtggctcaattaatgataattattcaaagatcacatcacatacagaggaaatcatattccacaaactctgttgat |
208 |
Q |
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| T |
43716174 |
tcaccagatcccactcctgcaggtggtggctcaattaatgataataattcaaagatca-----catacagaggaaatcatattccacaaactctgttgat |
43716268 |
T |
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| Q |
209 |
accctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaactaatcgagtaaacatgtagaaaatatataaagacttatattaactt |
308 |
Q |
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| T |
43716269 |
accctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaactaatcgagtaaacatgtagaaaatatataaagacttatattaactt |
43716368 |
T |
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| Q |
309 |
agatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaataaagacttatcttcaggtttactgggagacactgattcatctctagc- |
407 |
Q |
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| T |
43716369 |
agatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaat--agacttatcttcaggtttactgggagacactgattcatctctagct |
43716466 |
T |
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| Q |
408 |
tttctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaa |
485 |
Q |
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| T |
43716467 |
tttctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaa |
43716544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 522 - 587
Target Start/End: Original strand, 43716542 - 43716607
Alignment:
| Q |
522 |
gaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtga |
587 |
Q |
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| T |
43716542 |
gaaatcaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtga |
43716607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 584
Target Start/End: Complemental strand, 6814847 - 6814772
Alignment:
| Q |
509 |
ccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccag |
584 |
Q |
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| T |
6814847 |
ccatacttggaaaaaaatcgattgcccaatctgccaatgcttccatcatcactggccaaagactccacatatccag |
6814772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 393 - 587
Target Start/End: Complemental strand, 52887439 - 52887249
Alignment:
| Q |
393 |
tgattcatctctagctttctatgttattaacatataaaaa-gaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaattgtag |
491 |
Q |
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| T |
52887439 |
tgattcatctctagctgtctaagttattaacaagtaaaaaagaagtccaaa-gtactgaacttttggaaggcaaaga---taagttgagat-aattgcaa |
52887345 |
T |
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| Q |
492 |
tcagatgtatttgagagccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtga |
587 |
Q |
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| T |
52887344 |
tcaaatgtagttgagagccatacttgaaaagaaatcaatagcccaatctgatagtgcttccatcatcaatggccaaaggttccacatgtccagtga |
52887249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 52891503 - 52891346
Alignment:
| Q |
47 |
aatcagagacaacaagaagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctg------caggtggtggctc |
140 |
Q |
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| T |
52891503 |
aatcagagacaacaagaagaag---ctagaaaaaataataa---gttaacaatcatttacaatcaccagatcccattccagtcctagcaggtggtggcca |
52891410 |
T |
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| Q |
141 |
aattaatgataattattcaaagatcacatcacatacagaggaaatcatattccacaaactctgttgata |
209 |
Q |
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| T |
52891409 |
aattaatgataataattcaaagatcactt-----acagaggaaatcatattccacaaactctgttgata |
52891346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 52891029 - 52890957
Alignment:
| Q |
289 |
ataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaata |
361 |
Q |
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| T |
52891029 |
ataaagacttatattaacttaaatgtcagagcaaccaggaaaatatttgacagatattccatgtttttgaata |
52890957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 52891300 - 52891238
Alignment:
| Q |
224 |
ataattgtccaaagaaaccagaatatctgcagaataaactaatcgagtaaacatgtagaaaat |
286 |
Q |
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| T |
52891300 |
ataattgtccaaaggaaccataatatctgcagaataaactaatcaagtaaatatgtagaaaat |
52891238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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