View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_high_1 (Length: 745)
Name: NF16930_high_1
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 39612408 - 39612851
Alignment:
| Q |
1 |
aaaagacagacaaatggtatccaaaaccatgtcaaggaaagcagatagattctatacttttacatcaacaacaatgaaaaagtagagtcacattctactc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39612408 |
aaaagacagacaaatggtatccaaaaccatgtcaaggaaagcagagagattctatacttttacatcaacaacaatgaaaaagtagagtcacattctactc |
39612507 |
T |
|
| Q |
101 |
aagacacaccaaatttaatttttaattcaaatccaacatcactaatttcttagcaaggtaggtaatgcttcaatctaataatgtatcacatgcatgtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39612508 |
aagacacaccaaatttaatttttaattcaaatccaacatcactaatttcttagcaaggtaggtaatgcttcaatctaataatgtatcacatgcatgtcat |
39612607 |
T |
|
| Q |
201 |
taaaagggaacaatgaaacatatagaataggaagtatagcgattataatcataaccatgaccccaatttatttatgcaacgaatctgaatgctggctaac |
300 |
Q |
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| T |
39612608 |
taaaagggaaca---------atagaataggaagtatagtgattataatcataaccatgaccccaatttatttatgcaacgaatcttaatgatggctaac |
39612698 |
T |
|
| Q |
301 |
taataagccaaagccttacggcattacattaaatcacaatatcacatcaacaagattggtatattgcttcaaataatccaaatttttaatcaaaatgatg |
400 |
Q |
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| T |
39612699 |
taataagccaaagccttacggcattacattaaatcacaacatcacatcaacaagattggtatatttcttcaaataatccaaatttttaatcaaaatgatg |
39612798 |
T |
|
| Q |
401 |
tagnnnnnnnnnnntaacaacattataaattttgtaactatagctaattaattt |
454 |
Q |
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| T |
39612799 |
tagaaaaaaaaaaa-aaaaacattataaattttgtaactatagctaattaattt |
39612851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 504 - 729
Target Start/End: Original strand, 39612901 - 39613126
Alignment:
| Q |
504 |
cagctctagcaagaacacaaatcatgaaaaaacacgtggcataaatcccgtgaattttccaatttgtctttggcggttgccgtaacaccaccttatgaaa |
603 |
Q |
| |
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|
| T |
39612901 |
cagctctagcaagaacacaaatcatgaaaaaacacgtggcataaatcccgtgaattttccaatttgtctttggcggttgccgtaacaccaccttatgaaa |
39613000 |
T |
|
| Q |
604 |
caccgtcatgtagtaatgtagcccaacagaaaagcccacgaacatttgggccaagcccaatagctttgagcccaaaccacaatccgttgaaaaaaccaaa |
703 |
Q |
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| T |
39613001 |
caccgtcatgtagtaatgtagcccaacagaaaagcccacgaacatttgggccaaacccaatagctttgagcccaaaccacaatccgttgaaaaaaccaaa |
39613100 |
T |
|
| Q |
704 |
acaagatacatcaaaagcatcataag |
729 |
Q |
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| T |
39613101 |
acaagatacatcaaaagcatcataag |
39613126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 532 - 645
Target Start/End: Original strand, 37917337 - 37917450
Alignment:
| Q |
532 |
aaaacacgtggcataaatcccgtgaattttccaatttgtctttggcggttgccgtaacaccaccttatgaaacaccgtcatgtagtaatgtagcccaaca |
631 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| | ||||||||| || |||| |
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| T |
37917337 |
aaaacatgtggcataaatcccgtgaattttccaattactcttcggcggttgccgcaacaccaccttatgaaacaccgttacgtagtaatgaaggccaatt |
37917436 |
T |
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| Q |
632 |
gaaaagcccacgaa |
645 |
Q |
| |
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||||| |||||||| |
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|
| T |
37917437 |
gaaaaacccacgaa |
37917450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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