View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16930_high_10 (Length: 321)

Name: NF16930_high_10
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16930_high_10
NF16930_high_10
[»] chr8 (1 HSPs)
chr8 (17-311)||(16387489-16387783)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 16387489 - 16387783
Alignment:
Q  17 accatgattaatggatgcattcaatcttgttgaaaatctcaacgatattatcatgctcacctagtacattatttttggcattggcttataggtttttcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16387489 accatgattaatggatgcattcaatcttgttgaaaatctcaacgatattatcatgctcacctagtacattatttttggcattggcttataggtttttcaa 16387588  T
Q  117 acattatttcattcatgttgaactcattttttagaggaaacatacctaaccattggttgatgagttatgacaagtacactaatatctgctataaaaaaca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  16387589 acattatttcattcatgttgaactcattttttagaggaaacatacctaaccattggttgatgagttatgacaagtacactcatctctgctataaaaaaca 16387688  T
Q  217 agaggctaaggatatggagattgttgttttcaaattcattctttaaatgagtgctttaaaggttctgagattctatcccttagccactatctgtg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16387689 agaggctaaggatatggagattgttgttttcaaattcattctttaaatgagtgctttaaaggttctgagattctatcccttagccactatctgtg 16387783  T

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