View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16930_high_11 (Length: 308)

Name: NF16930_high_11
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16930_high_11
NF16930_high_11
[»] chr3 (11 HSPs)
chr3 (108-291)||(5835055-5835236)
chr3 (111-291)||(2747207-2747387)
chr3 (106-291)||(18110858-18111044)
chr3 (111-239)||(14521831-14521959)
chr3 (178-291)||(5938232-5938345)
chr3 (111-291)||(37489146-37489327)
chr3 (111-296)||(28034112-28034296)
chr3 (111-239)||(19360052-19360184)
chr3 (108-238)||(19440499-19440629)
chr3 (123-193)||(11418187-11418257)
chr3 (254-291)||(19440631-19440668)
[»] chr4 (10 HSPs)
chr4 (116-291)||(6735874-6736049)
chr4 (111-291)||(31666408-31666586)
chr4 (111-261)||(1505118-1505270)
chr4 (111-243)||(5579285-5579418)
chr4 (107-183)||(4851810-4851886)
chr4 (111-183)||(13701736-13701808)
chr4 (111-183)||(13712229-13712301)
chr4 (108-183)||(2895380-2895455)
chr4 (108-182)||(5908268-5908342)
chr4 (111-175)||(5599025-5599089)
[»] chr7 (7 HSPs)
chr7 (107-281)||(4340313-4340487)
chr7 (111-243)||(21959388-21959521)
chr7 (103-239)||(19802010-19802148)
chr7 (108-261)||(3079189-3079341)
chr7 (108-238)||(3080627-3080753)
chr7 (108-183)||(48477170-48477245)
chr7 (108-183)||(42786738-42786813)
[»] chr2 (3 HSPs)
chr2 (111-291)||(31347516-31347698)
chr2 (111-291)||(31314417-31314598)
chr2 (107-291)||(2696579-2696763)
[»] chr6 (8 HSPs)
chr6 (111-274)||(8519050-8519213)
chr6 (116-291)||(31113759-31113933)
chr6 (111-239)||(34256375-34256505)
chr6 (111-243)||(28144160-28144295)
chr6 (111-216)||(5131530-5131636)
chr6 (111-250)||(6405888-6406027)
chr6 (107-167)||(8706819-8706879)
chr6 (111-175)||(33301373-33301437)
[»] chr1 (9 HSPs)
chr1 (108-261)||(15088031-15088184)
chr1 (108-261)||(22210639-22210792)
chr1 (108-261)||(22219389-22219542)
chr1 (108-261)||(22207076-22207229)
chr1 (110-261)||(7898768-7898921)
chr1 (111-271)||(51843718-51843877)
chr1 (108-183)||(14115782-14115857)
chr1 (111-201)||(44193651-44193741)
chr1 (232-291)||(44193595-44193654)
[»] scaffold0060 (1 HSPs)
scaffold0060 (107-291)||(45320-45503)
[»] scaffold0043 (1 HSPs)
scaffold0043 (111-291)||(70263-70444)
[»] chr8 (5 HSPs)
chr8 (111-291)||(20811151-20811331)
chr8 (111-239)||(5556895-5557026)
chr8 (111-296)||(4844550-4844732)
chr8 (170-291)||(3166554-3166675)
chr8 (198-291)||(25335992-25336085)
[»] scaffold0018 (1 HSPs)
scaffold0018 (107-259)||(66158-66311)
[»] chr5 (2 HSPs)
chr5 (106-239)||(41527645-41527780)
chr5 (135-182)||(37456419-37456464)
[»] scaffold0158 (2 HSPs)
scaffold0158 (111-239)||(175-304)
scaffold0158 (111-239)||(37631-37761)
[»] scaffold0046 (1 HSPs)
scaffold0046 (111-274)||(89614-89776)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 108 - 291
Target Start/End: Original strand, 5835055 - 5835236
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||  |    
T  5835055 tgaaacacccctactataaattacctaggatatctagcatgagtattaaacttggcattggatacattaaaattaccataataaaaatttcctctga--a 5835152  T
Q  208 agatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||    
T  5835153 agatatagaaattctcattttatacctctgaaataataccacttacgtgaactttatatgatctagcgacttctgcttcttcat 5835236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 2747387 - 2747207
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||| | | ||||||||||||| | ||||||    
T  2747387 aacacccctactagaaattacctaggatatctagaatgtatgttaaacttggcattggatacattaaaattacaatagtaaaaatttcctctggataaga 2747288  T
Q  211 tatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||| | ||||| ||||||||||||||| | |||||||| | || ||||||||||||||||||||||||||| |||||||||    
T  2747287 tatggtaattcccgtcttatacctctggagtaataccattgacatgaactttatatggtccagcgacttctgcttcttcat 2747207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 106 - 291
Target Start/End: Original strand, 18110858 - 18111044
Alignment:
Q  106 catgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaa 205  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| | | || |||||||||||  |||    
T  18110858 catgtaacacccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggatacattaaaatttcaacaacaaaaatttcctttgaa 18110957  T
Q  206 taagatatag-aaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||||||| || ||||||||||||||||||| |||||||| || |||  |||||||||| ||||||||| |||||||| |||||||||    
T  18110958 taagatacagaaaattctcgtcttatacctttgaaataacactactggcgtgaactttgtatggtccatcgacttctgcttcttcat 18111044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 14521959 - 14521831
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||    
T  14521959 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacaataaaaatttcctctgaataaga 14521860  T
Q  211 tatagaaattctcgtcttatacctctgaa 239  Q
    || | ||||||||||||||||||||||||    
T  14521859 tacaaaaattctcgtcttatacctctgaa 14521831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 5938232 - 5938345
Alignment:
Q  178 aattaccaaaataaaaatttcctcggaataagatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgac 277  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5938232 aattaccataataaaaatttcctctgaataagatatagaaattctcatcttatacctctgaaataataccacttacgtgaactttatatggtccagcgac 5938331  T
Q  278 ttctacttcttcat 291  Q
    |||| |||||||||    
T  5938332 ttctgcttcttcat 5938345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 111 - 291
Target Start/End: Original strand, 37489146 - 37489327
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||    
T  37489146 aacacccctactaaaattttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaatactaaaaatttcctctgaataaga 37489245  T
Q  211 tat-agaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||| | |||||||| |  |||||||||| ||||| |||||| | ||||||||| |||||||||||||||||  |||||||||    
T  37489246 tataaaaaattctccttatatacctctgcaataacaccactgatgtgaactttgtatggtccagcgacttcagcttcttcat 37489327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 111 - 296
Target Start/End: Original strand, 28034112 - 28034296
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||  | ||| ||  ||||    
T  28034112 aacacccctactagaaatttccaaggatatctagcatgtgtgttaaaattggcattggatacattaaaattacaataataaaaaaattctctga--aaga 28034209  T
Q  211 tatagaaa-ttctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcatgatga 296  Q
    |||||||| || || || |||| ||||| ||||| |||||| | ||||||||| |||||||||||||||||| ||||||||| ||||    
T  28034210 tatagaaatttttcttcatatatctctgcaataacaccactgatgtgaactttgtatggtccagcgacttctgcttcttcatcatga 28034296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 19360184 - 19360052
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||    
T  19360184 aacacccctactagaaattacatacgatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctctgaataaga 19360085  T
Q  211 t----atagaaattctcgtcttatacctctgaa 239  Q
    |    | | |||||| |||||||||||||||||    
T  19360084 tacaaaaaaaaattcccgtcttatacctctgaa 19360052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 19440499 - 19440629
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    ||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| | ||| ||  |||  |  |||||    
T  19440499 tgaaacatccctgctagaaattacctaggatatctagcgtgtgtgttaaacttggcattgggtacattaaaattacaataat-aattttttttttgaata 19440597  T
Q  208 agatatag-aaattctcgtcttatacctctga 238  Q
    |||||||| ||||||||||| |||||||||||    
T  19440598 agatatagaaaattctcgtcatatacctctga 19440629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 11418187 - 11418257
Alignment:
Q  123 agaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaa 193  Q
    |||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||| | |||||||    
T  11418187 agaaattacctaggatatctagcacgtgcgttaaacttggcattgcatacattaaaattacaataataaaa 11418257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 19440631 - 19440668
Alignment:
Q  254 gtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  19440631 gtgaactttgtatggtccagcgacttctgcttcttcat 19440668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 6736049 - 6735874
Alignment:
Q  116 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataagatatag 215  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||  || ||||| ||||    
T  6736049 ccctactagaaattacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaaaatttcctatgattaagacatag 6735950  T
Q  216 aaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||||||| | |||||| |||||||||    
T  6735949 aaattctcgtcttatacctctgaaataataccagtgacttgaactttatatggtccaacaacttctgcttcttcat 6735874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 31666586 - 31666408
Alignment:
Q  111 aacacccctactagaaattacctaggat--atctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataa 208  Q
    ||||||||||||||||||||||||||||  |||||||||   ||||||||||||||||||||||||||||||||  | |||||||| ||| || ||||||    
T  31666586 aacacccctactagaaattacctaggatttatctagcatttatgttaaacttggcattggatacattaaaattagaataataaaaaattcttctgaataa 31666487  T
Q  209 gatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||||| ||| |||||||||||||||| ||||||||||||||| ||| ||||||||    ||||||||||||||  ||||||||    
T  31666486 gatatggaagttctcgtcttatacctttgaaataataccactgacgcgaacttta----gtccagcgacttctgtttcttcat 31666408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 261
Target Start/End: Original strand, 1505118 - 1505270
Alignment:
Q  111 aacacccctactagaaatt-acctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataag 209  Q
    |||| ||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| | |||||| |||||||| |||||||    
T  1505118 aacatccctaatagaaatttacctaggatatctagcatgtgtgttaaatttggcattggatacactaaaattacaataataaagatttcctctgaataag 1505217  T
Q  210 atatag-aaattctcgtcttatacctctgaaataataccacttacgtgaactt 261  Q
    |||||| ||||||||||||||||||||| |||||| || ||| ||||||||||    
T  1505218 atatagaaaattctcgtcttatacctctaaaataacactactgacgtgaactt 1505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 5579418 - 5579285
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||||||| |||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||| | ||||||||||||||  |||||| |    
T  5579418 aacacccctactagaaatttcctaggatatctagcatgtgtgctaaatttggcattgaatatattaaaattacaataataaaaatttccttcgaataata 5579319  T
Q  211 tatag-aaattctcgtcttatacctctgaaataa 243  Q
    ||||| |||| |||||||||||||||||||||||    
T  5579318 tatagaaaatgctcgtcttatacctctgaaataa 5579285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 4851810 - 4851886
Alignment:
Q  107 atgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattac 183  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  4851810 atgaaacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattac 4851886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 13701736 - 13701808
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattac 183  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13701736 aacaccccgactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattac 13701808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 13712229 - 13712301
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattac 183  Q
    |||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13712229 aacaccccgactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattac 13712301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 2895455 - 2895380
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattac 183  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  2895455 tgaaacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattac 2895380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 5908268 - 5908342
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaatta 182  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||||||||    
T  5908268 tgaaacacccttactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaatta 5908342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 175
Target Start/End: Original strand, 5599025 - 5599089
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacatt 175  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||    
T  5599025 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacatt 5599089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 4340313 - 4340487
Alignment:
Q  107 atgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaat 206  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||||| |||||||||||| | |||||||||||| || ||||    
T  4340313 atgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcggtggatgcattaaaattacaataataaaaatttcttctgaat 4340412  T
Q  207 aagatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttct 281  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||    
T  4340413 aagatatggaaatgctcgtcttatacctctgaaataataccactgacgtgaactttatatgatccagctacttct 4340487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 21959521 - 21959388
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |    
T  21959521 aacacccctactagaaatttcctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataataaaaatttcctctgaataata 21959422  T
Q  211 tatag-aaattctcgtcttatacctctgaaataa 243  Q
    ||||| ||||||||||||||||||||||||||||    
T  21959421 tatagaaaattctcgtcttatacctctgaaataa 21959388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 19802010 - 19802148
Alignment:
Q  103 ttgcatgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcg 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||||||||     
T  19802010 ttgcatgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttgacaatggatacattaaaattacaacaataaaaatttcctct 19802109  T
Q  203 gaataagat--atagaaattctcgtcttatacctctgaa 239  Q
    |||||||||  | | ||| ||||||||||||||||||||    
T  19802110 gaataagatacaaaaaaaatctcgtcttatacctctgaa 19802148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 261
Target Start/End: Complemental strand, 3079341 - 3079189
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| | | ||| |||||||  || ||||     
T  3079341 tgaaacacccctactagacattacctatgatatctagcatgtgtgttaaacttgacattggatacattaaaatttcaataat-aaaattttttctgaatg 3079243  T
Q  208 agatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactt 261  Q
    | |||| ||||| ||| | |||||||| |||||||||||||||  |||||||||    
T  3079242 aaatatggaaatgctcattttatacctttgaaataataccactgtcgtgaactt 3079189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 238
Target Start/End: Original strand, 3080627 - 3080753
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    |||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| | | |||||||||||||||    ||    
T  3080627 tgaaacacccctactagacattacctatgatatctagcatgtgtgtgaaacttggcattggatacattaaaatttcaataataaaaatttcctc----ta 3080722  T
Q  208 agatatagaaattctcgtcttatacctctga 238  Q
    | |||| ||||| ||||||||||||| ||||    
T  3080723 aaatatggaaatgctcgtcttataccactga 3080753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 48477170 - 48477245
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattac 183  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||    
T  48477170 tgaaacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgtcggatacattaaaattac 48477245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 42786813 - 42786738
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattac 183  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||| | |||||||||||||||||    
T  42786813 tgaaacacccctactagaaatcacctaggatatctagcatttgtgttaaacttggcgtcggatacattaaaattac 42786738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 31347698 - 31347516
Alignment:
Q  111 aacacccctactagaaattacctaggat--atctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataa 208  Q
    ||||||||||||||||||||||||||||  |||||||||  |||||||| ||||||||||||||||||||||||  | ||| |||| |||||| ||||||    
T  31347698 aacacccctactagaaattacctaggatttatctagcatttgtgttaaagttggcattggatacattaaaattagaataatcaaaacttcctctgaataa 31347599  T
Q  209 gatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  31347598 gatatggaagttctcgtcttataactctgaaataataccactgacgtgaactttatatggtccagcgacttctgcttcttcat 31347516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 111 - 291
Target Start/End: Original strand, 31314417 - 31314598
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| ||  ||||| ||    
T  31314417 aacacccctactagaaatttcctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacaataaaaattttctttgaatagga 31314516  T
Q  211 tatag-aaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    || || |||||||||||||||||||  ||||||| || |||  |||||||||| ||||||||| | |||||| |||||||||    
T  31314517 tacagaaaattctcgtcttataccttggaaataacactactggcgtgaactttgtatggtccatcaacttctgcttcttcat 31314598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 2696763 - 2696579
Alignment:
Q  107 atgaaacacccc-tactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacca-aaataaaaatttcctcgga 204  Q
    |||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||| | ||||||||| || |||| | ||||||| |||  ||| ||    
T  2696763 atgaaacaccccctactagaaatcacctaggatatctaggatgtgtgttaaacttggcgtcggatacattgaagttacaataaataaatatt--ctctga 2696666  T
Q  205 ataagatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    | ||   |||||| |||||| ||  |||||| |||||| | ||||| ||||| |||||| || ||||||| || ||| |||||||||    
T  2696665 acaaatcatagaatttctcgcctattacctcagaaatagttccactgacgtgtactttacatagtccagctacatctgcttcttcat 2696579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 8519050 - 8519213
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || | |||||||||||| |  ||||||||    
T  8519050 aacacccctactagacattacctaggatatctagcatgcgtgttaaacttggcagtggatacattaaaatcacaataataaaaatttcttttgaataaga 8519149  T
Q  211 tatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagc 274  Q
    ||| ||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8519150 tatggaaatgctcgtcttatgcctctgaaataataccactgacgtgaactttatatggtccagc 8519213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 31113933 - 31113759
Alignment:
Q  116 ccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataagatatag 215  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||  | ||| |||||| | ||||    
T  31113933 ccctactagaaattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaacaataaaaaaattctctgaataaaacatag 31113834  T
Q  216 aaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||| |||||| |||||||||| |||||||| || | ||||||||||||||||||||| | |||||| |||||||||    
T  31113833 aaa-tctcgtattatacctctaaaataatatcaatgacgtgaactttatatggtccaacaacttctgcttcttcat 31113759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 34256505 - 34256375
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||  ||||||||    
T  34256505 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctttgaataaga 34256406  T
Q  211 t--atagaaattctcgtcttatacctctgaa 239  Q
    |  | | ||||||||||||||||||||||||    
T  34256405 tacaaaaaaattctcgtcttatacctctgaa 34256375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 28144160 - 28144295
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||||||| |||| |||||||||||||  ||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |    
T  28144160 aacacccctactagaaatttcctatgatatctagcatgtatgttaaaattggcattggatacattaaaattacaataataaaaatttcctcggaataata 28144259  T
Q  211 tatag-aaattctcgtct--tatacctctgaaataa 243  Q
    ||||| ||||||||||||  ||||||||||||||||    
T  28144260 tatagaaaattctcgtcttatatacctctgaaataa 28144295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 5131636 - 5131530
Alignment:
Q  111 aacacccctactagaaatt-acctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataag 209  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||| ||||| || |||||||    
T  5131636 aacacccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaagatttcttctgaataag 5131537  T
Q  210 atataga 216  Q
    |||||||    
T  5131536 atataga 5131530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 250
Target Start/End: Original strand, 6405888 - 6406027
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||| ||||||||||||| |||||||||||||||| | ||||||||||||| | |||||||||||||||| | ||| |||| || ||| ||| ||      
T  6405888 aacacccatactagaaattacataggatatctagcatgtgcgttaaacttggcacttgatacattaaaattacaataattaaaaatttctctgaacaaat 6405987  T
Q  211 tatagaaattctcgtcttatacctctgaaataataccact 250  Q
    ||||||| | ||||| | ||||||||| |||| |||||||    
T  6405988 tatagaattactcgtttgatacctctggaatagtaccact 6406027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 8706879 - 8706819
Alignment:
Q  107 atgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattg 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  8706879 atgaaacacccctactagaaatcacctaggatatctagcatgagtgttaaacttgacattg 8706819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 33301437 - 33301373
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacatt 175  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||    
T  33301437 aacacccctactagaaatcacctaggatatctagcatgtgtgttaaacttggcgttggatacatt 33301373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 15088031 - 15088184
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||  |||     
T  15088031 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 15088130  T
Q  208 agatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactt 261  Q
    | |||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  15088131 aaatatggaaatgctcgtcttatacctctgaaataataccacttacgtgaactt 15088184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 22210639 - 22210792
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||  |||     
T  22210639 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 22210738  T
Q  208 agatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactt 261  Q
    | |||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  22210739 aaatatggaaatgctcgtcttatacctctgaaataataccacttacgtgaactt 22210792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 22219389 - 22219542
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||  |||     
T  22219389 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 22219488  T
Q  208 agatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactt 261  Q
    | |||| ||||| |||||||||||||||||||||||||||| | ||||||||||    
T  22219489 aaatatggaaatgctcgtcttatacctctgaaataataccattgacgtgaactt 22219542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 261
Target Start/End: Original strand, 22207076 - 22207229
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaata 207  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||||||  |||     
T  22207076 tgaaacacccctactagacattacctaggatatctagcatgtgtgttaaacttggcattggatacattaaaatttcaataataaaaatttcctcttaatg 22207175  T
Q  208 agatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactt 261  Q
    | |||| ||||| |||| ||||||| ||||||||||||||||| ||||||||||    
T  22207176 aaatatggaaatgctcgacttatacgtctgaaataataccactgacgtgaactt 22207229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 110 - 261
Target Start/End: Original strand, 7898768 - 7898921
Alignment:
Q  110 aaacacccctactagaaatt-acctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataa 208  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||| |||||||  ||||||    
T  7898768 aaacacccctactagaaatttacctaggatatctagcatgtgtgttaaatttggcattggatacattaaaattacaataataaagatttcctttgaataa 7898867  T
Q  209 gatatag-aaattctcgtcttatacctctgaaataataccacttacgtgaactt 261  Q
    ||||||| ||||||||||||||||||||| |||||| || ||| ||||||||||    
T  7898868 gatatagaaaattctcgtcttatacctctaaaataacactactgacgtgaactt 7898921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 111 - 271
Target Start/End: Original strand, 51843718 - 51843877
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||| ||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| | |||||||||| || | |||||| |    
T  51843718 aacacccttactagacattacctaggatatctagcgtgtgtgttaaacttggtattggatacattaaaattacaataataaaaattcccgcagaataaaa 51843817  T
Q  211 tatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtcc 271  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||    
T  51843818 tata-aaattctcgtcttatacctttgaaataataccactgacgtgaattttatatagtcc 51843877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 14115857 - 14115782
Alignment:
Q  108 tgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattac 183  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  14115857 tgaaacacccatactagaaatcacctaggatatctagcatgtgtgttaaacttggcatcggatacattaaaattac 14115782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 44193741 - 44193651
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctc 201  Q
    ||||||||||||||| ||| |||| ||||||||| | | ||||||||||||||||||||||| |||||||||| |  ||||||||||||||    
T  44193741 aacacccctactagacatttcctaagatatctagtacgtgtgttaaacttggcattggatactttaaaattacaattataaaaatttcctc 44193651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 44193654 - 44193595
Alignment:
Q  232 cctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||||||| ||| |||||    
T  44193654 cctctgaaataagaccactgacgtgaactttgtatggtccagcgacttctgcttattcat 44193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 45503 - 45320
Alignment:
Q  107 atgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaat 206  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||  |||||||||||| | | |||||| |||||||| ||||    
T  45503 atgaaacaccc-tactagaaattacctaggatatctagcatgtgtgttaaacttgacattgagtacattaaaatttcaataataaatatttcctctgaat 45405  T
Q  207 aagatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    |||||||||||||| | || |||||||||||||||||||||||| | |||||||||| |||||||||| |||||| |||||||||    
T  45404 aagatatagaaatttttgtattatacctctgaaataataccactcatgtgaactttaaatggtccagcaacttctgcttcttcat 45320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 70444 - 70263
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||    
T  70444 aacacccctactagacatttcctaggatatctagcatgtgtgttaaacttggcattgaatacattaaaattacaataataaaaatttcctctgaataaga 70345  T
Q  211 tatag-aaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    ||||| |||||||| || |||||||||| ||||| |||||| || |||||||| |||||| ||||||||||| ||| |||||    
T  70344 tatagaaaattctcttcatatacctctgcaataagaccactaacttgaactttgtatggttcagcgacttctgctttttcat 70263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 20811331 - 20811151
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||| |||||| | ||||||    
T  20811331 aacacccctactagaatttacgtaggatatctagcatgtgtgttaaacttggcattggatacattaaaattacaataat-aaaacttcctctggataaga 20811233  T
Q  211 tatagaaattctcgtcttatacctctgaaat-aataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    |||||||||| ||||||||||||| | |||| ||||||| | | |||||||||||||||||||| ||||||| |||||||||    
T  20811232 tatagaaattatcgtcttatacctttaaaataaataccattgatgtgaactttatatggtccagtgacttctgcttcttcat 20811151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 5556895 - 5557026
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||    
T  5556895 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctctgaataaga 5556994  T
Q  211 t---atagaaattctcgtcttatacctctgaa 239  Q
    |   | | |||||| |||||||||||||||||    
T  5556995 tacaaaaaaaattcccgtcttatacctctgaa 5557026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 296
Target Start/End: Complemental strand, 4844732 - 4844550
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||| | |||| |||||||||| |||| |||    
T  4844732 aacacccctactagaaatttcctaggatatctagcatg--tgttaaacttgggattggatacattaaaattacaataatacaaatttcctctgaattaga 4844635  T
Q  211 tataga-aattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcatgatga 296  Q
    ||| || |||||||||| || |||| |||||||| |||||| | ||||   || |||||||||||||||||| ||||||||| ||||    
T  4844634 tattgagaattctcgtcctagacctttgaaataacaccactgatgtga--cttgtatggtccagcgacttctgcttcttcatcatga 4844550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 3166675 - 3166554
Alignment:
Q  170 tacattaaaattaccaaaataaaaatttcctcggaataagatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggt 269  Q
    |||||||||||| | | |||||| ||||||||  ||||||||||||||||| ||||||||||||| |||||||||||||||   |||||||||| |||||    
T  3166675 tacattaaaatttcaataataaatatttcctctaaataagatatagaaattttcgtcttatacctttgaaataataccactgcagtgaactttaaatggt 3166576  T
Q  270 ccagcgacttctacttcttcat 291  Q
     ||||||||||| |||||||||    
T  3166575 gcagcgacttctgcttcttcat 3166554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 25335992 - 25336085
Alignment:
Q  198 cctcggaataagatatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagcgacttctacttcttcat 291  Q
    |||| |||||| |||||||| |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  25335992 cctctgaataaaatatagaacttctcgtcttatacctctaaaatgataccacatacgtgaactttatatggtccagcgacttctgcttcttcat 25336085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 107 - 259
Target Start/End: Complemental strand, 66311 - 66158
Alignment:
Q  107 atgaaacacccctactagaaattacctaggatatctagcatga-gtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaa 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||| |||||||||| | || ||||| || ||  |||    
T  66311 atgaaacacccctactagaaattacctagaatatctagcatggtgtgttaaacttggcattgggtacgttaaaattacaataagaaaaaatttctttgaa 66212  T
Q  206 taagatatagaaattctcgtcttatacctctgaaataataccacttacgtgaac 259  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  66211 taagatatagaaattctcgtcttatacctctaaaataataccactgacgtgaac 66158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 41527645 - 41527780
Alignment:
Q  106 catgaaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaa 205  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||    
T  41527645 catgtaacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattactacaataaaaatttcctctgaa 41527744  T
Q  206 taagat--atagaaattctcgtcttatacctctgaa 239  Q
    ||||||  | | |||||| |||||||||||||||||    
T  41527745 taagatacaaaaaaattcccgtcttatacctctgaa 41527780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 37456464 - 37456419
Alignment:
Q  135 ggatatctagcatgagtgttaaacttggcattggatacattaaaatta 182  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||    
T  37456464 ggatatctagcatgagt--taaacttggcattggatacattaaaatta 37456419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 304 - 175
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaataaaaatttcctcggaataaga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||||| ||||||||    
T  304 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcaatggatacattaaaattacaacgataaaaatttcctctgaataaga 205  T
Q  211 ta-tagaaattctcgtcttatacctctgaa 239  Q
    ||  | ||||| ||||||||||||||||||    
T  204 tacaaaaaattatcgtcttatacctctgaa 175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 37761 - 37631
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattaccaaaat-aaaaatttcctcggaataag 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |  || |||||||||||| |||||||    
T  37761 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcagtggatacattaaaatgacaacgataaaaaatttcctctgaataag 37662  T
Q  210 ata-tagaaattctcgtcttatacctctgaa 239  Q
    |||  | ||||||||||||||||||||||||    
T  37661 atacaaaaaattctcgtcttatacctctgaa 37631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 89614 - 89776
Alignment:
Q  111 aacacccctactagaaattacctaggatatctagcatgagtgttaaacttggcattggatacattaaaattacca-aaataaaaatttcctcggaataag 209  Q
    |||||||||||||||||||  ||||||||||||||||| | ||||||||||| | |||||||||||||||||| | |||||||||||  ||| ||| ||     
T  89614 aacacccctactagaaattttctaggatatctagcatgtgcgttaaacttggtactggatacattaaaattacaataaataaaaatt--ctctgaacaaa 89711  T
Q  210 atatagaaattctcgtcttatacctctgaaataataccacttacgtgaactttatatggtccagc 274  Q
      |||||| ||||||  |  |||||| |||||| ||||||  ||||| ||||||||| |||||||    
T  89712 tcatagaatttctcgcttgttacctcagaaatagtaccaccgacgtgtactttatatagtccagc 89776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University