View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16930_high_18 (Length: 277)
Name: NF16930_high_18
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 4143427 - 4143179
Alignment:
| Q |
17 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatat-----ttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4143427 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatatgaaatttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
4143328 |
T |
|
| Q |
112 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4143327 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
4143228 |
T |
|
| Q |
212 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttg |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4143227 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttg |
4143179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 4138604 - 4138453
Alignment:
| Q |
89 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaat |
188 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||| |||||| | |||||||||||||||||||| || |
|
|
| T |
4138604 |
caggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctat |
4138505 |
T |
|
| Q |
189 |
atccaaagatctcataaattggactcatttgaatcatgctattgaaccaact |
240 |
Q |
| |
|
||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
4138504 |
atcaaatgatctcataaattggactcatctaaatgatgctattgtaccaact |
4138453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 4129811 - 4129737
Alignment:
| Q |
166 |
aaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaact |
240 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| |
|
|
| T |
4129811 |
aaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaact |
4129737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 4130450 - 4130402
Alignment:
| Q |
89 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataa |
137 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||| |||| |
|
|
| T |
4130450 |
caggaccaatgtactataaaggagtttaccatttattctaccaatataa |
4130402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University