View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16930_high_24 (Length: 249)
Name: NF16930_high_24
Description: NF16930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16930_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 27444177 - 27444408
Alignment:
| Q |
8 |
caaacaaaatatgccgtcttaattaatttttgttaatttttgtcnnnnnnnnnnnntaagtgcatgtatacaaatgaaacatatacagacacatttgtca |
107 |
Q |
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| T |
27444177 |
caaacaaaatatgccgtcttaattaatttttgttaatttttgtcaaaaataaaa--taagtgcatgtatacaaatgaa-cgtatacagacacatttgtca |
27444273 |
T |
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| Q |
108 |
tgtaatataaaccacaagtattttcaattattattgcagtaannnnnnnataatttattgtcttgatgggtgtattatataggttatgctccttatgtcg |
207 |
Q |
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| T |
27444274 |
tgtaatataaaccacaagtattttcaattattattgcagtaatttttttataatttattgtcttgatgggtttattatataggttatgctccttatgtcg |
27444373 |
T |
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| Q |
208 |
tcatcagcatttaatcttgtcctttttctgtgttc |
242 |
Q |
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| T |
27444374 |
tcatcagcatttaatcttgtcctttttctgtgttc |
27444408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 27432383 - 27432298
Alignment:
| Q |
64 |
taagtgcatgtatacaaatgaaacatatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa |
149 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27432383 |
taagtgcatgtatacaaatgaaacgtatacagacacatttgtcatgtaatataaaccacaagtattttcaattattattgcagtaa |
27432298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 27432433 - 27432405
Alignment:
| Q |
8 |
caaacaaaatatgccgtcttaattaattt |
36 |
Q |
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| T |
27432433 |
caaacaaaatatgccgtcttaattaattt |
27432405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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